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timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
103 stars 21 forks source link

ERROR: LoadError: SystemError: opening file "/home/emanuele/Whippet.jl/bin/../index/graph.jls": No such file or directory #134

Closed emanueleraggi closed 1 year ago

emanueleraggi commented 1 year ago

Hello, I am following the procedure to install Whippet.jl on the official repo. As I go ahead and compile the project it stops throwing the following error:

ERROR: LoadError: SystemError: opening file "/home/emanuele/Whippet.jl/bin/../index/graph.jls": No such file or directory

Now, if you go the available files in the official repo there is no such directory. It looks like that the /index/graph.jls is not in the github. Unless that has to be created somewhere else?

How do I solve that? Thanks for any advise everyone.

timbitz commented 1 year ago

Hi @emanueleraggi -- Did you try following the documentation? You have to build an index.

Oliverfeudj commented 1 year ago

Good Morning @timbitz I am facing the same error when I run julia bin/whippet-index.jl --fasta hg19.fa.gz --gtf anno/gencode_hg19.v25.tsl1.gtf.gz to get the index. Do you have any clue where it might come from, please? Thank you for your help

timbitz commented 1 year ago

You can use the -x parameter to specify the location/name of the saved index

esmagamze commented 1 year ago

I have also the same problem. Could you write code for how to fix it.