Expand on SAM flags/reporting used - Githubissues

timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level

MIT License

105 stars 21 forks source link

Expand on SAM flags/reporting used #14

Closed timbitz closed 8 years ago

timbitz commented 8 years ago

Need to support chimeric SAM output for:

[x] Paired-end Reads
[x] Repetitive SAM alignments