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timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
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Regarding ArgumentError: cannot create a mer with ambiguous nucleotides #144

Open PRIYANKA-22091995 opened 10 months ago

PRIYANKA-22091995 commented 10 months ago

Hello Sir, I was trying to run the first command i.e. julia bin/whippet-index.jl --fasta hg19.fa.gz --gtf anno/gencode_hg19.v25.tsl1.gtf.gz, but it is showing the following error constantly.It would be nice have your insights on the same. Note-Both the fasta file and gtf file was downloaded from ensembl.

Thanks & Regards Priyanka Roy Screenshot (61)

timbitz commented 10 months ago

Hi @PRIYANKA-22091995 -- Can I ask which version of Julia is this? Did you get a confirmation that Testing Whippet tests passed when instantiating and testing the package with julia --project -e 'using Pkg; Pkg.instantiate(); Pkg.test()'?