hello,I have some questions with quantifing pair-end data,
when I use code with:
julia /home/jiayi01/chenhui_project/Whippet.jl/bin/whippet-quant.jl \
/home/jiayi01/chenhui_project/fastq/RNAseq_stiCD4CD8/nai-CD8-1_R1_001.clean.fastq.gz \
/home/jiayi01/chenhui_project/fastq/RNAseq_stiCD4CD8/nai-CD8-1_R2_001.clean.fastq.gz \
--out /home/jiayi01/chenhui_project/alternative_splicing/whippet/CD8_sti/nai-CD8-1
It only gives me one output like this:
but actually,I should have two outputs like: nai-CD8-1-R1.psi.gz nai-CD8-1-R2.psi.gz
hello,I have some questions with quantifing pair-end data, when I use code with: julia /home/jiayi01/chenhui_project/Whippet.jl/bin/whippet-quant.jl \ /home/jiayi01/chenhui_project/fastq/RNAseq_stiCD4CD8/nai-CD8-1_R1_001.clean.fastq.gz \ /home/jiayi01/chenhui_project/fastq/RNAseq_stiCD4CD8/nai-CD8-1_R2_001.clean.fastq.gz \ --out /home/jiayi01/chenhui_project/alternative_splicing/whippet/CD8_sti/nai-CD8-1
It only gives me one output like this:
but actually,I should have two outputs like: nai-CD8-1-R1.psi.gz nai-CD8-1-R2.psi.gz
Could you help me? Thanks