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timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
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Is Whippet adapted for long reads? #147

Open Oliverfeudj opened 3 months ago

Oliverfeudj commented 3 months ago

Hello all, I would like to know if whippet is adapted for long reads and if anyone has already used it on Nanopore long read RNA-seq

Thank you for your reply Best Oliver

timbitz commented 3 months ago

I would not think it would work well with nanopore long-read sequencing, and I do not recommend Whippet for this purpose. But you could check out our other repository that is specifically for quantification and analysis of long-read sequencing data: https://github.com/timbitz/Isosceles