How do I know if an event in the .diff.gz output was calculated involving unannotated alternative junctions

timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level

MIT License

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How do I know if an event in the .diff.gz output was calculated involving unannotated alternative junctions #150

Open santataRU opened 1 month ago

santataRU commented 1 month ago

Hi, All,

Is there a way to know if an event in the.diff.gz output was calculated using unannotated alternative junctions? Although I built an annotation (GTF) only index, according to the Whippet manual, I would still assume there are events involving unannotated alternative junctions.

Xiao