Hi,
I am trying to include unannotated splice-sites in the index but whippet keeps crashing. I prepared the bam file as suggested on the README (I aligned the reads with STAR).
This the command I'm using:
julia whippet-index.jl --fasta reference.fa --gtf annotation.gtf --index whippet-index --bam alignments.bam
Hi, I am trying to include unannotated splice-sites in the index but whippet keeps crashing. I prepared the bam file as suggested on the README (I aligned the reads with STAR).
This the command I'm using:
Here the log:
Here the full log with the full array: whippet.log.
I cannot upload the data here since the zip is too big but I uploaded them on drive (here the link)
If I remove the
--bam
argument, it works.Thanks, Luca