This pull request contains a number of new features!
[x] --curl flag allows user to input web url of fastq or fastq.gz file instead of location of file on disk
[x] --ebi flag allows user to input a single sequencing run accession id (ie. SRR1199010) as sole input; fastq file locations are fetched and then alignment/processing occurs via --http streaming on the fly
[x] basic tests for --curl and --ebi
NOTE: In order to use HTTPClient I had to turn off precompile(), so it is necessary to rm ~/.julia/lib/v0.4/SpliceGraphs.ji before re-running julia dependencies.jl
This pull request contains a number of new features!
NOTE: In order to use HTTPClient I had to turn off precompile(), so it is necessary to
rm ~/.julia/lib/v0.4/SpliceGraphs.ji
before re-runningjulia dependencies.jl