Whippet Index Too Sloooow

timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level

MIT License

105 stars 21 forks source link

Whippet Index Too Sloooow #34

Closed timbitz closed 7 years ago

timbitz commented 7 years ago

It seems to me that 2h to build an index is unacceptable. On the sgbioseq branch it takes 9 minutes to build the human index for hg19. Find a way to use BioSequences to build SGSequences without decreasing FMIndex efficiency.

timbitz commented 7 years ago

Closed by #35