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timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
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Junction output #36

Closed timbitz closed 7 years ago

timbitz commented 7 years ago

This branch provides new output (in output.jnc.gz) containing the exon-exon junctions, number of reads, and their annotation status. For example:

chr1  150600068   150601890   ENSG00000143420.17_1:2-3:ANNO 52.0  -
chr1  150598284   150599943   ENSG00000143420.17_1:3-6:ANNO 46.0  -
chr1  150598284   150599530   ENSG00000143420.17_1:5-6:UNIQ 3.0   -
chr1  150598117   150598118   ENSG00000143420.17_1:6-7:ANNO 6.0   -
chr1  150595335   150598118   ENSG00000143420.17_1:6-9:ANNO 51.0  -
chr1  150595335   150595757   ENSG00000143420.17_1:8-9:UNIQ 1.0   -
timbitz commented 7 years ago

Current coverage is 45.42% (diff: 0.00%)

Merging #36 into fast-whippet will decrease coverage by 0.65%

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