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timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
105 stars 21 forks source link

Julia v0.6 Compatibility #55

Closed timbitz closed 6 years ago

timbitz commented 6 years ago

This is a major pull request. It updates Whippet to support Julia v0.6 (without backwards compatibility to v0.5). There are a number of other additional simulation scripts added.

codecov[bot] commented 6 years ago

Codecov Report

Merging #55 into master will increase coverage by 4.15%. The diff coverage is 39.09%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #55      +/-   ##
==========================================
+ Coverage   46.43%   50.59%   +4.15%     
==========================================
  Files          16       17       +1     
  Lines        1951     1945       -6     
==========================================
+ Hits          906      984      +78     
+ Misses       1045      961      -84
Impacted Files Coverage Δ
src/refset.jl 94.83% <ø> (+1.33%) :arrow_up:
src/quant.jl 34.1% <ø> (+5.76%) :arrow_up:
src/diff.jl 0% <ø> (ø) :arrow_up:
src/paired.jl 0% <0%> (ø) :arrow_up:
src/types.jl 37.5% <0%> (-42.5%) :arrow_down:
src/index.jl 10.93% <0%> (-6.98%) :arrow_down:
src/ebi.jl 0% <0%> (-80%) :arrow_down:
src/io.jl 34.91% <0%> (+1.39%) :arrow_up:
src/fmindex_patch.jl 100% <100%> (+100%) :arrow_up:
src/record.jl 100% <100%> (ø)
... and 19 more

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