timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
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5' Sequence and fragment GC-content bias correction #59

Closed timbitz closed 6 years ago

timbitz commented 6 years ago

This is another very large PR which implements bias correction methods:

codecov[bot] commented 6 years ago

Codecov Report

Merging #59 into 0.6-genelength-long will increase coverage by 0.49%. The diff coverage is 46.69%.

Impacted file tree graph

@@                   Coverage Diff                   @@
##           0.6-genelength-long      #59      +/-   ##
=======================================================
+ Coverage                51.62%   52.11%   +0.49%     
=======================================================
  Files                       17       18       +1     
  Lines                     2127     2318     +191     
=======================================================
+ Hits                      1098     1208     +110     
- Misses                    1029     1110      +81
Impacted Files Coverage Δ
src/ebi.jl 80% <ø> (+80%) :arrow_up:
src/graph.jl 93.51% <100%> (+1.76%) :arrow_up:
src/sgkmer.jl 80% <100%> (+1.42%) :arrow_up:
src/io.jl 33.14% <11.11%> (-0.1%) :arrow_down:
src/quant.jl 44.33% <31.5%> (-2.91%) :arrow_down:
src/events.jl 56.94% <45.83%> (ø) :arrow_up:
src/bias.jl 49.09% <49.09%> (ø)
src/reads.jl 30.18% <55%> (+16.67%) :arrow_up:
... and 1 more

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