Closed timbitz closed 6 years ago
Merging #60 into 0.6-biasopt will increase coverage by
0.92%
. The diff coverage is62.85%
.
@@ Coverage Diff @@
## 0.6-biasopt #60 +/- ##
===============================================
+ Coverage 49.51% 50.43% +0.92%
===============================================
Files 18 18
Lines 2361 2393 +32
===============================================
+ Hits 1169 1207 +38
+ Misses 1192 1186 -6
Impacted Files | Coverage Δ | |
---|---|---|
src/ebi.jl | 80% <ø> (+80%) |
:arrow_up: |
src/bias.jl | 30.81% <0%> (-0.19%) |
:arrow_down: |
src/reads.jl | 30.18% <64.7%> (+17.03%) |
:arrow_up: |
src/types.jl | 87.5% <0%> (+50%) |
:arrow_up: |
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--ebi and --url features are back by popular demand! @harpur @weatheritt2
In a less than scientific benchmark on my Macbook pro, the full re-analysis of a benchmark dataset SRR2300536 (22M paired-end reads) took ~37min with Whippet --ebi flag, meanwhile just downloading the dataset alone with
wget
took ~25mins.