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timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
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Over-enumeration bugfix #62

Closed timbitz closed 6 years ago

timbitz commented 6 years ago

Some very deep-datasets 100M+ (with overlapping chained AS events) and certain indices can over enumerate, causing a hang at the MLE stage. This PR uses down-sampling to enforce an upper bound to path enumeration.

codecov[bot] commented 6 years ago

Codecov Report

Merging #62 into master will decrease coverage by 0.07%. The diff coverage is 33.33%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #62      +/-   ##
==========================================
- Coverage    54.1%   54.03%   -0.08%     
==========================================
  Files          18       18              
  Lines        2325     2330       +5     
==========================================
+ Hits         1258     1259       +1     
- Misses       1067     1071       +4
Impacted Files Coverage Δ
src/events.jl 56.53% <33.33%> (-0.42%) :arrow_down:

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