Closed AndrewLangvt closed 6 years ago
Hi @AndrewLangvt, It looks like you're still using Whippet v0.8?.. Can you update to v0.10.2? a lot has changed since then, and it is not recommended to use such an old version.
That being said, I did just find a bug that was outputting an extra dummy PSI line for tandem 3'UTRs (which sounds like it could throw such an error in theory) that I have fixed in #64, but I haven't yet merged these changes, though I will in the next couple days.
Either way, all Whippet versions from v0.9+ are now installed as a standard package from the julia REPL making it trivial to update to the newest releases in the future by using 'Pkg.update()'.
I figured it out, not sure what the bug is, though likely fixed by a version update. I was able to still run my wippet_delta comparisons so long as I ran it from the directory where the quant files are located. Seems like running from another directory, even with the -d
flag specifying where to look for the psi.gz
files was throwing some issue. Thanks for the quick response!
Hi Tim,
Finally cranking through this analysis with my entire dataset now. Running into an issue with "matching events" in the whippet_delta function.
I have tried running this command exactly the same, except with removing each psi.gz file, one at a time, thinking perhaps one of my samples didn't map properly. Still get the same error though... any thoughts as to what might be the underlying issue?