There's an additional column in the output files

timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level

MIT License

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There's an additional column in the output files #88

Closed aleighbrown closed 2 years ago

aleighbrown commented 4 years ago

FYI:

Appears that output files have a tab at the end which makes R, probably python pandas too haven't tried, think there's an additional column of NA. Very small problem, just letting you know

Isoform\tTpM\tRead_Counts\n ENSMUST00000158976\t0.0\t0.0\t\n

Not 100% on this, but I'm thinking this caused by the use of tab_write in the io.jl script for the last values....

timbitz commented 4 years ago

Good catch, Thanks!. I think it is only the .tpm files that are printed from output_tpm() at the end of src/quant.jl. If you see any other files that have this let me know, but I think those are the only ones -- I'll fix next update.