Closed brianstock-NOAA closed 4 years ago
Probably should also initialize NAA
and F
in first year at the values listed in the asap3 file:
input$data$Fbar_ages = seq(asap3$dat$Frep_ages[1], asap3$dat$Frep_ages[2])
input$par$log_N1_pars = log(asap3$dat$N1_ini)
input$par$log_F1 = log(asap3$dat$F1_ini)
Fixed in 70a698ef4b96abacb9043ddc930066b7711f51de. NAA in first year (input$par$log_N1_pars
), F in first year (input$par$log_F1
), and q (input$par$logit_q
) are now initialized at values from asap3 file. Ages to average F over (input$data$Fbar_ages
) is also now taken from asap3 file.
Also ce98e17971fa68738edba140145fa99d14256e70: if using mean recruitment (no SR function), initialize R0
at initial NAA-1.
ASAP3 data files have an entry for which ages to average F over to report total F, e.g.
Line 474 of
prepare_wham_input
does not use this: