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timkartar / DeepPBS

Geometric deep learning of protein–DNA binding specificity
BSD 3-Clause "New" or "Revised" License
50 stars 6 forks source link

Your job was unable to process correctly. Please ensure the file you uploaded was valid #7

Closed Somanath-SS closed 2 months ago

Somanath-SS commented 2 months ago

FIles are valid, The only issue is, If the file is containing more than one DNA molecules, DeepPBS isnt able to process it.

timkartar commented 2 months ago

You have to create separate files with one DNA helix in each. You can achieve this using pyMOL or Biopython. Hope this is helpful.

Somanath-SS commented 2 months ago

so DeepPBS can uptake one Dna molecule(limited length) at a time, but irrespective of the number of protein?

timkartar commented 2 months ago

Yes (except no limit on DNA length). Please read the FAQ page on the webserver for basic requirements. deeppbs.usc.edu/ -> 'show FAQ'

Closing this now. Please feel free to reopen with a more specific query (e.g. example of a file that u r trying to run and if anything unique is happening there that is not covered in the FAQ)