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timknut / geno_imputation

Documentation and code base for the Geno/Roslin imputation project
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Code example for extracting SNP-names from Matrix-format lacking #2

Closed timknut closed 8 years ago

timknut commented 8 years ago

Issue by Paolo #1

Fix by Paolo:

For matrix format change 

grep '11190319_1210' FinalReport_54kV2_feb2011_ed1.txt | cut -f 1 > illumina54k_v2_markerlist.txt

# with (input_file MUST be in illuminamatrix format)

cut -f1 input_file | tail -n +11 >output_file
timknut commented 8 years ago

Not relevant as ioSNP.py does it automatically.