missing code for doing heterozygosity-filtering.

timknut / geno_imputation

Documentation and code base for the Geno/Roslin imputation project

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missing code for doing heterozygosity-filtering. #23

Closed timknut closed 7 years ago

timknut commented 7 years ago

@Unoqualsiasi Steps 6 here: https://github.com/timknut/geno_imputation/blob/master/scripts/plink_workflow.Rmd

It is unclear how you implemented the HET filter and at what threshold you set it? Can you please include how you made the file hetero_remove and the HEt threshold? This is the commit #16

Unoqualsiasi commented 7 years ago

Fixed

argju commented 7 years ago

Documented in hetero_geno.Rmd commits : 2ba77b29 & e940f395 Closing #23