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timnat / DifCover

The DifCover pipeline aims to identify regions in a reference genome for which the read coverage of a sample1 to the reference is significantly different from the read coverage of a sample2. “Significantly different” is determined by user defined threshold on a ration between average coverages of given samples. The pipeline allows to exclude from a consideration the under-represented fragments (with low coverage in sequencing of both samples) and/or the regions that carry repetitive sequences. Both cases can be misleading in the coverage analysis. The DifCover pipeline is specifically oriented to the analysis of large genomes and can handle very fragmented assemblies.
MIT License
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#solution to error with executalbe "from_unionbed_to_ratio_per_window_CC0" #2

Open ferrojm opened 1 year ago

ferrojm commented 1 year ago

Hi!

I found an issue with the file from_unionbed_to_ratio_per_window_CC0 that comes with the downloaded version 3. The file seems to be crashed and do not run even after giving permissions with chmod.

I solved this by deleting this file and compiling it with make.

Regards

timnat commented 1 year ago

Thank you for reporting, it will be helpful to other users if they encounter the same issue. The binary file may not be compatible with all systems, that's why Make file is provided.

чт, 23 февр. 2023 г. в 14:03, ferrojm @.***>:

Hi!

I found an issue with the file from_unionbed_to_ratio_per_window_CC0 that comes with the downloaded version 3. The file seems to be crashed and do not run even after giving permissions with chmod.

I solved this by deleting this file and compiling it with make.

Regards

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