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timoast / sinto

Tools for single-cell data processing
https://timoast.github.io/sinto/
MIT License
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Single cell RNA seq: cellranger BAM file split by filtered cell barcode as separate file #43

Closed kulansam closed 2 years ago

kulansam commented 2 years ago

Is sinto is able to split the single-cell RNA seq BAM file into multiple files for each filtered barcode (available in cellranger output)

timoast commented 2 years ago

Yes, see https://timoast.github.io/sinto/basic_usage.html#filter-cell-barcodes-from-bam-file