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timofei7 / master_protein

http://www.grigoryanlab.org/master/
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save search parameters per search #13

Open timofei7 opened 9 years ago

timofei7 commented 9 years ago

perhaps expose in the A menu

timofei7 commented 9 years ago

From David: I did find this on the wiki and it looks like a complete log file (including things clicked) is supported. So unless there is a reason to record the MASTER search at another level that isn't in the PyMOL menu (maybe still the default settings on the MASTER server being used like "tune" parameter etc.. or it could be important what database used?) the menu level picks can be recorded in the .pml files.

Recording Your Work (Optional)

While you are learning PyMOL or doing complex projects, you may want to keep a record of all the commands you give in a plain text log-file that you can read and edit. To open a log-file, type the command log_open followed by a file-name:

SYNTAX

log_open log-file-name

EXAMPLE

PyMOL> log_open log1.pml
All your commands, typed or clicked, will be recorded in the log-file. You should give your log-file-name the extension ".pml" so you can load the file as a script, to repeat your commands in a new session (see the subsection titled "Sessions and Scripts" below).

To stop recording your commands, type log_close. If you don't type log_close before you exit PyMOL, your log-file will still be saved to disk.

If you just want to save the current state of your PyMOL work without concern for the steps you took and the commands you gave, you can create a session-file (see "Sessions and Scripts").

timofei7 commented 9 years ago

i still think exposing some of the search params saved with the selection might be good so you can see at a glance what you are doing during your session. "i just tried 1.5, let me try 1.1 now" sommething like that.