timothydmorton
commented
4 years ago I marked this test as skipping with pytest since it is failing, and it hasn't risen to any sort of priority to investigate since the isochrones query functionality is not really central at all. If you run the tests with pytest it should skip it more gracefully.
Hello, I am trying to get started with isochrones. I attempted to run nosetests isochrones and am running into a problem.
I have tried the following:
conda create -n isochrones numpy numba cython nose pytables pandas flaky pytestconda activate isochronesconda install -c conda-forge multinest pymultinestpip install isochronesnosetests isochronesThis produces the output below. Based on the recommendation to some of the other issues raised here, I have also tried specifying
numpy=1.15, but that creates problems with astropy.Many thanks!
Output and error:
/opt/anaconda3/envs/isochrones/lib/python3.8/site-packages/isochrones/tests/test_fits.py:6: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead. from pandas.util.testing import assert_frame_equal ....... MultiNest Warning: no resume file found, starting from scratch
MultiNest v3.10 Copyright Farhan Feroz & Mike Hobson Release Jul 2015
no. of live points = 5 dimensionality = 5
ln(ev)= -2352.1399760148479 +/- 0.56735137479947284
Total Likelihood Evaluations: 5 Sampling finished. Exiting MultiNest . MultiNest Warning: no resume file found, starting from scratch
MultiNest v3.10 Copyright Farhan Feroz & Mike Hobson Release Jul 2015
no. of live points = 20 dimensionality = 5
ln(ev)= -41.507141363729289 +/- NaN Total Likelihood Evaluations: 274 Sampling finished. Exiting MultiNest ................/opt/anaconda3/envs/isochrones/lib/python3.8/site-packages/isochrones/priors.py:89: RuntimeWarning: divide by zero encountered in true_divide sigma = 1.0 / np.sqrt(hn) ../opt/anaconda3/envs/isochrones/lib/python3.8/site-packages/isochrones/query/catalog.py:60: TableReplaceWarning: converted column 'extKey' from integer to float df = self.df.sort_values(by=self._distance_column) E.......
ERROR: Testing with first entry from Gaia DR1 TGAS table
Traceback (most recent call last): File "/opt/anaconda3/envs/isochrones/lib/python3.8/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/opt/anaconda3/envs/isochrones/lib/python3.8/site-packages/isochrones/tests/test_query.py", line 41, in test_queries assert gaia.get_id() == 7632157690368 File "/opt/anaconda3/envs/isochrones/lib/python3.8/site-packages/isochrones/query/catalog.py", line 73, in get_id row = self.closest File "/opt/anaconda3/envs/isochrones/lib/python3.8/site-packages/isochrones/query/catalog.py", line 60, in closest df = self.df.sort_values(by=self._distance_column) File "/opt/anaconda3/envs/isochrones/lib/python3.8/site-packages/isochrones/query/catalog.py", line 55, in df raise EmptyQueryError("No good sources found! ({})".format(self.query)) isochrones.query.query.EmptyQueryError: No good sources found! ((45.03433035439128, 0.23539164875137225), pm=(43.75231341609215, -7.641989988351148), epoch=2015.0, radius=5.0 arcsec)
Ran 34 tests in 121.320s
FAILED (errors=1)