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timothydmorton / isochrones

Pythonic stellar model grid access; easy MCMC fitting of stellar properties
http://isochrones.readthedocs.org
MIT License
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An error for nosetests isochrones #173

Open AstroJLin opened 2 years ago

AstroJLin commented 2 years ago

Hi,

When I run nosetests isochrones, those error is reported. Can you give me some suggestions?

Thanks!

(base) [linj@psr ~]$ nosetests isochrones /home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_fits.py:6: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead. from pandas.util.testing import assert_frame_equal /home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py:97: DtypeWarning: Columns (17) have mixed types.Specify dtype option on import or set low_memory=False. df = pd.concat([self.to_df(f) for f in self.get_filenames()]) /home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/series.py:726: RuntimeWarning: divide by zero encountered in log10 result = getattr(ufunc, method)(*inputs, kwargs) EEE....E/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py:97: DtypeWarning: Columns (17) have mixed types.Specify dtype option on import or set low_memory=False. df = pd.concat([self.to_df(f) for f in self.get_filenames()]) /home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/series.py:726: RuntimeWarning: divide by zero encountered in log10 result = getattr(ufunc, method)(*inputs, *kwargs) E.EEE/home/linj/anaconda3/lib/python3.9/site-packages/numpy/core/shape_base.py:65: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. ary = asanyarray(ary) ./home/linj/anaconda3/lib/python3.9/site-packages/numpy/core/shape_base.py:65: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. ary = asanyarray(ary) ...........E/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py:97: DtypeWarning: Columns (17) have mixed types.Specify dtype option on import or set low_memory=False. df = pd.concat([self.to_df(f) for f in self.get_filenames()]) /home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/series.py:726: RuntimeWarning: divide by zero encountered in log10 result = getattr(ufunc, method)(inputs, kwargs) EEE....

ERROR: isochrones.tests.test_basic.test_mist_basic

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_basic.py", line 14, in test_mist_basic _basic_ic_checks(ic) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_basic.py", line 92, in _basic_ic_checks eep = ic.get_eep(1.0, age, feh, accurate=True) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 509, in get_eep return self.get_eep_accurate(mass, age, feh, **kwargs) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 558, in get_eep_accurate while np.isnan(self.mass_age_resid(eep0, mass, age, feh)): File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 712, in mass_age_resid mass_interp = self.interp_value([eep, age, feh], ["initial_mass"]) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 400, in interp_value return self.model_grid.interp(pars, props) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 136, in interp self._interp = DFInterpolator(self.df, filename=filename, is_full=self.is_full) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 158, in df self._df = self.read_hdf() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 109, in read_hdf df = self.write_hdf(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 113, in write_hdf df = self.get_df(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 117, in get_df df = self.compute_additional_columns(df) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/mist/models.py", line 84, in compute_additional_columns df["feh"] = df["log_surf_z"] - np.log10(df["surface_h1"]) - np.log10(0.0181) # Aaron Dotter says File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/common.py", line 65, in new_method return method(self, other) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/init.py", line 343, in wrapper result = arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 190, in arithmetic_op res_values = na_arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 150, in na_arithmetic_op result = masked_arith_op(left, right, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 92, in masked_arith_op result[mask] = op(xrav[mask], yrav[mask]) TypeError: unsupported operand type(s) for -: 'str' and 'float' -------------------- >> begin captured logging << -------------------- matplotlib: DEBUG: matplotlib data path: /home/linj/anaconda3/lib/python3.9/site-packages/matplotlib/mpl-data matplotlib: DEBUG: CONFIGDIR=/home/linj/.config/matplotlib matplotlib: DEBUG: interactive is False matplotlib: DEBUG: platform is linux matplotlib: DEBUG: loaded modules: ['] matplotlib: DEBUG: CACHEDIR=/home/linj/.cache/matplotlib matplotlib.font_manager: DEBUG: Using fontManager instance from /home/linj/.cache/matplotlib/fontlist-v330.json matplotlib.pyplot: DEBUG: Loaded backend qtagg version unknown. matplotlib.pyplot: DEBUG: Loaded backend QtAgg version unknown. h5py._conv: DEBUG: Creating converter from 7 to 5 h5py._conv: DEBUG: Creating converter from 5 to 7 h5py._conv: DEBUG: Creating converter from 7 to 5 h5py._conv: DEBUG: Creating converter from 5 to 7 numexpr.utils: INFO: Note: detected 72 virtual cores but NumExpr set to maximum of 64, check "NUMEXPR_MAX_THREADS" environment variable. numexpr.utils: INFO: Note: NumExpr detected 72 cores but "NUMEXPR_MAX_THREADS" not set, so enforcing safe limit of 8. numexpr.utils: INFO: NumExpr defaulting to 8 threads. --------------------- >> end captured logging << ---------------------

====================================================================== ERROR: isochrones.tests.test_basic.test_closest_eep

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 107, in read_hdf df = pd.read_hdf(h5file, path) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/io/pytables.py", line 387, in read_hdf raise FileNotFoundError(f"File {path_or_buf} does not exist") FileNotFoundError: File /home/linj/.isochrones/mist/mist_v1.2_vvcrit0.4_full_isos.h5 does not exist

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 143, in na_arithmetic_op result = expressions.evaluate(op, left, right) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/computation/expressions.py", line 233, in evaluate return _evaluate(op, op_str, a, b) # type: ignore File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/computation/expressions.py", line 119, in _evaluate_numexpr result = _evaluate_standard(op, op_str, a, b) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/computation/expressions.py", line 68, in _evaluate_standard return op(a, b) TypeError: unsupported operand type(s) for -: 'str' and 'float'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_basic.py", line 24, in test_closest_eep _check_closest_eep(mist, n=n) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_basic.py", line 65, in _check_closest_eep eeps = [ File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_basic.py", line 66, in ic.get_eep(m, a, f, return_nan=True, resid_tol=resid_tol, accurate=True) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 509, in get_eep return self.get_eep_accurate(mass, age, feh, **kwargs) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 558, in get_eep_accurate while np.isnan(self.mass_age_resid(eep0, mass, age, feh)): File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 712, in mass_age_resid mass_interp = self.interp_value([eep, age, feh], ["initial_mass"]) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 400, in interp_value return self.model_grid.interp(pars, props) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 136, in interp self._interp = DFInterpolator(self.df, filename=filename, is_full=self.is_full) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 158, in df self._df = self.read_hdf() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 109, in read_hdf df = self.write_hdf(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 113, in write_hdf df = self.get_df(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 117, in get_df df = self.compute_additional_columns(df) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/mist/models.py", line 84, in compute_additional_columns df["feh"] = df["log_surf_z"] - np.log10(df["surface_h1"]) - np.log10(0.0181) # Aaron Dotter says File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/common.py", line 65, in new_method return method(self, other) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/init.py", line 343, in wrapper result = arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 190, in arithmetic_op res_values = na_arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 150, in na_arithmetic_op result = masked_arith_op(left, right, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 92, in masked_arith_op result[mask] = op(xrav[mask], yrav[mask]) TypeError: unsupported operand type(s) for -: 'str' and 'float'

====================================================================== ERROR: isochrones.tests.test_basic.test_spec

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_basic.py", line 29, in test_spec _check_spec(mist) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_basic.py", line 124, in _check_spec eep = ic.get_eep(1.0, 9.6, 0.1, accurate=True) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 509, in get_eep return self.get_eep_accurate(mass, age, feh, **kwargs) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 558, in get_eep_accurate while np.isnan(self.mass_age_resid(eep0, mass, age, feh)): File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 712, in mass_age_resid mass_interp = self.interp_value([eep, age, feh], ["initial_mass"]) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 400, in interp_value return self.model_grid.interp(pars, props) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 136, in interp self._interp = DFInterpolator(self.df, filename=filename, is_full=self.is_full) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 158, in df self._df = self.read_hdf() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 109, in read_hdf df = self.write_hdf(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 113, in write_hdf df = self.get_df(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 117, in get_df df = self.compute_additional_columns(df) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/mist/models.py", line 84, in compute_additional_columns df["feh"] = df["log_surf_z"] - np.log10(df["surface_h1"]) - np.log10(0.0181) # Aaron Dotter says File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/common.py", line 65, in new_method return method(self, other) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/init.py", line 343, in wrapper result = arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 190, in arithmetic_op res_values = na_arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 150, in na_arithmetic_op result = masked_arith_op(left, right, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 92, in masked_arith_op result[mask] = op(xrav[mask], yrav[mask]) TypeError: unsupported operand type(s) for -: 'str' and 'float' -------------------- >> begin captured logging << -------------------- isochrones: DEBUG: Building ObservationTree... --------------------- >> end captured logging << ---------------------

====================================================================== ERROR: Failure: ModuleNotFoundError (No module named 'flaky')

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/loader.py", line 416, in loadTestsFromName module = self.importer.importFromPath( File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/home/linj/anaconda3/lib/python3.9/imp.py", line 234, in load_module return load_source(name, filename, file) File "/home/linj/anaconda3/lib/python3.9/imp.py", line 171, in load_source module = _load(spec) File "", line 711, in _load File "", line 680, in _load_unlocked File "", line 850, in exec_module File "", line 228, in _call_with_frames_removed File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_fits.py", line 7, in from flaky import flaky ModuleNotFoundError: No module named 'flaky'

====================================================================== ERROR: isochrones.tests.test_ini.test_ini

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_ini.py", line 14, in test_ini _check_ini(MIST) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_ini.py", line 26, in _check_ini SingleCheck().check(ic, os.path.join(FOLDER, d)) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_ini.py", line 70, in check self.check_asserts(mod) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_ini.py", line 49, in check_asserts eep_pars = mod.convert_pars_to_eep(self.pars) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/starmodel.py", line 447, in convert_pars_to_eep eeps = {s: self.ic.get_eep(p[0:3], accurate=True) for s, p in pardict.items()} File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/starmodel.py", line 447, in eeps = {s: self.ic.get_eep(*p[0:3], accurate=True) for s, p in pardict.items()} File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 509, in get_eep return self.get_eep_accurate(mass, age, feh, **kwargs) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 558, in get_eep_accurate while np.isnan(self.mass_age_resid(eep0, mass, age, feh)): File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 712, in mass_age_resid mass_interp = self.interp_value([eep, age, feh], ["initial_mass"]) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 400, in interp_value return self.model_grid.interp(pars, props) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 136, in interp self._interp = DFInterpolator(self.df, filename=filename, is_full=self.is_full) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 158, in df self._df = self.read_hdf() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 109, in read_hdf df = self.write_hdf(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 113, in write_hdf df = self.get_df(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 117, in get_df df = self.compute_additional_columns(df) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/mist/models.py", line 84, in compute_additional_columns df["feh"] = df["log_surf_z"] - np.log10(df["surface_h1"]) - np.log10(0.0181) # Aaron Dotter says File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/common.py", line 65, in new_method return method(self, other) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/init.py", line 343, in wrapper result = arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 190, in arithmetic_op res_values = na_arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 150, in na_arithmetic_op result = masked_arith_op(left, right, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 92, in masked_arith_op result[mask] = op(xrav[mask], yrav[mask]) TypeError: unsupported operand type(s) for -: 'str' and 'float' -------------------- >> begin captured stdout << --------------------- checking /home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/star1 root ╚═ WISE W1=(12.00, 0.05) @(0.00, 0 [4.00]) ╚═ WISE W2=(11.50, 0.05) @(0.00, 0 [4.00]) ╚═ twomass H=(12.85, 0.02) @(0.00, 0 [4.00]) ╚═ twomass J=(13.51, 0.02) @(0.00, 0 [4.00]) ╚═ twomass K=(12.69, 0.02) @(0.00, 0 [4.00]) ╚═ 0_0, Teff=[4135.0, 98.0], feh=[-0.46, 0.16], logg=[4.711, 0.1]

--------------------- >> end captured stdout << ---------------------- -------------------- >> begin captured logging << -------------------- isochrones: DEBUG: Initializing StarModel from /home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/star1/star.ini isochrones: DEBUG: Obs is root --------------------- >> end captured logging << ---------------------

====================================================================== ERROR: isochrones.tests.test_likelihood.test_compare_starmodels

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_likelihood.py", line 23, in test_compare_starmodels assert np.isclose(m1.lnlike(pars), m2.lnlike(pars)) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/starmodel.py", line 549, in lnlike Teff, logg, feh, mags = self.ic.interp_mag(pars, self.bands) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 436, in interp_mag self.model_grid.interp.grid, File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 136, in interp self._interp = DFInterpolator(self.df, filename=filename, is_full=self.is_full) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 158, in df self._df = self.read_hdf() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 109, in read_hdf df = self.write_hdf(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 113, in write_hdf df = self.get_df(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 117, in get_df df = self.compute_additional_columns(df) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/mist/models.py", line 84, in compute_additional_columns df["feh"] = df["log_surf_z"] - np.log10(df["surface_h1"]) - np.log10(0.0181) # Aaron Dotter says File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/common.py", line 65, in new_method return method(self, other) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/init.py", line 343, in wrapper result = arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 190, in arithmetic_op res_values = na_arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 150, in na_arithmetic_op result = masked_arith_op(left, right, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 92, in masked_arith_op result[mask] = op(xrav[mask], yrav[mask]) TypeError: unsupported operand type(s) for -: 'str' and 'float' -------------------- >> begin captured logging << -------------------- isochrones: DEBUG: Building ObservationTree... isochrones: DEBUG: Adding (3.58, 0.05) @(0.0, 0.0) (-J) isochrones: DEBUG: Adding (3.22, 0.05) @(0.0, 0.0) (-K) --------------------- >> end captured logging << ---------------------

====================================================================== ERROR: isochrones.tests.test_likelihood.test_compare_spec

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_likelihood.py", line 53, in test_compare_spec test_compare_starmodels(props_spec) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_likelihood.py", line 23, in test_compare_starmodels assert np.isclose(m1.lnlike(pars), m2.lnlike(pars)) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/starmodel.py", line 549, in lnlike Teff, logg, feh, mags = self.ic.interp_mag(pars, self.bands) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 436, in interp_mag self.model_grid.interp.grid, File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 136, in interp self._interp = DFInterpolator(self.df, filename=filename, is_full=self.is_full) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 158, in df self._df = self.read_hdf() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 109, in read_hdf df = self.write_hdf(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 113, in write_hdf df = self.get_df(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 117, in get_df df = self.compute_additional_columns(df) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/mist/models.py", line 84, in compute_additional_columns df["feh"] = df["log_surf_z"] - np.log10(df["surface_h1"]) - np.log10(0.0181) # Aaron Dotter says File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/common.py", line 65, in new_method return method(self, other) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/init.py", line 343, in wrapper result = arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 190, in arithmetic_op res_values = na_arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 150, in na_arithmetic_op result = masked_arith_op(left, right, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 92, in masked_arith_op result[mask] = op(xrav[mask], yrav[mask]) TypeError: unsupported operand type(s) for -: 'str' and 'float' -------------------- >> begin captured logging << -------------------- isochrones: DEBUG: Building ObservationTree... --------------------- >> end captured logging << ---------------------

====================================================================== ERROR: isochrones.tests.test_likelihood.test_compare_phot

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_likelihood.py", line 57, in test_compare_phot test_compare_starmodels(props_phot) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_likelihood.py", line 23, in test_compare_starmodels assert np.isclose(m1.lnlike(pars), m2.lnlike(pars)) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/starmodel.py", line 549, in lnlike Teff, logg, feh, mags = self.ic.interp_mag(pars, self.bands) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 436, in interp_mag self.model_grid.interp.grid, File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 136, in interp self._interp = DFInterpolator(self.df, filename=filename, is_full=self.is_full) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 158, in df self._df = self.read_hdf() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 109, in read_hdf df = self.write_hdf(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 113, in write_hdf df = self.get_df(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 117, in get_df df = self.compute_additional_columns(df) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/mist/models.py", line 84, in compute_additional_columns df["feh"] = df["log_surf_z"] - np.log10(df["surface_h1"]) - np.log10(0.0181) # Aaron Dotter says File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/common.py", line 65, in new_method return method(self, other) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/init.py", line 343, in wrapper result = arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 190, in arithmetic_op res_values = na_arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 150, in na_arithmetic_op result = masked_arith_op(left, right, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 92, in masked_arith_op result[mask] = op(xrav[mask], yrav[mask]) TypeError: unsupported operand type(s) for -: 'str' and 'float' -------------------- >> begin captured logging << -------------------- isochrones: DEBUG: Building ObservationTree... isochrones: DEBUG: Adding (3.58, 0.05) @(0.0, 0.0) (-J) isochrones: DEBUG: Adding (3.22, 0.05) @(0.0, 0.0) (-K) --------------------- >> end captured logging << ---------------------

====================================================================== ERROR: Testing with first entry from Gaia DR1 TGAS table

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/numpy/ma/core.py", line 3187, in view output = ndarray.view(self, dtype) File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/coordinates/angles.py", line 692, in array_finalize super().array_finalize(obj) File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/units/quantity.py", line 549, in __array_finalize__ self._set_unit(unit) File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/coordinates/angles.py", line 160, in _set_unit super()._set_unit(self._convert_unit_to_angle_unit(unit)) File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/units/quantity.py", line 1931, in _set_unit raise UnitTypeError( astropy.units.core.UnitTypeError: Longitude instances require units equivalent to 'rad', so cannot set it to ''.

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/test_query.py", line 38, in test_queries assert tm.get_id() == b("03000819+0014074") # force byte literal b/c that's what gets returned File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/query/catalog.py", line 73, in get_id row = self.closest File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/query/catalog.py", line 60, in closest df = self.df.sort_values(by=self._distance_column) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/query/catalog.py", line 52, in df df = self.table.to_pandas() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/query/catalog.py", line 46, in table self._run_query() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/query/vizier.py", line 26, in _run_query self._coords = SkyCoord(self._table["_RAJ2000"], self._table["_DEJ2000"], unit="deg") File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/coordinates/sky_coordinate.py", line 331, in init skycoord_kwargs, components, info = _parse_coordinate_data( File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/coordinates/sky_coordinate_parsers.py", line 296, in _parse_coordinate_data _components[frame_attr_name] = attr_class(arg, unit=unit) File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/coordinates/angles.py", line 669, in new self = super().new(cls, angle, unit=unit, **kwargs) File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/coordinates/angles.py", line 138, in new return super().new(cls, angle, unit, dtype=dtype, copy=copy, File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/units/quantity.py", line 524, in new value = value.view(cls) File "/home/linj/anaconda3/lib/python3.9/site-packages/numpy/ma/core.py", line 3192, in view output = ndarray.view(self, dtype) File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/coordinates/angles.py", line 692, in array_finalize super().array_finalize(obj) File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/units/quantity.py", line 549, in __array_finalize__ self._set_unit(unit) File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/coordinates/angles.py", line 160, in _set_unit super()._set_unit(self._convert_unit_to_angle_unit(unit)) File "/home/linj/anaconda3/lib/python3.9/site-packages/astropy/units/quantity.py", line 1931, in _set_unit raise UnitTypeError( astropy.units.core.UnitTypeError: Longitude instances require units equivalent to 'rad', so cannot set it to ''.

====================================================================== ERROR: isochrones.tests.tests.test_mist_basic

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 107, in read_hdf df = pd.read_hdf(h5file, path) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/io/pytables.py", line 387, in read_hdf raise FileNotFoundError(f"File {path_or_buf} does not exist") FileNotFoundError: File /home/linj/.isochrones/mist/mist_v1.2_vvcrit0.4_full_isos.h5 does not exist

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 143, in na_arithmetic_op result = expressions.evaluate(op, left, right) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/computation/expressions.py", line 233, in evaluate return _evaluate(op, op_str, a, b) # type: ignore File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/computation/expressions.py", line 119, in _evaluate_numexpr result = _evaluate_standard(op, op_str, a, b) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/computation/expressions.py", line 68, in _evaluate_standard return op(a, b) TypeError: unsupported operand type(s) for -: 'str' and 'float'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/tests.py", line 14, in test_mist_basic _basic_ic_checks(ic) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/tests.py", line 92, in _basic_ic_checks eep = ic.get_eep(1.0, age, feh, accurate=True) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 509, in get_eep return self.get_eep_accurate(mass, age, feh, **kwargs) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 558, in get_eep_accurate while np.isnan(self.mass_age_resid(eep0, mass, age, feh)): File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 712, in mass_age_resid mass_interp = self.interp_value([eep, age, feh], ["initial_mass"]) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 400, in interp_value return self.model_grid.interp(pars, props) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 136, in interp self._interp = DFInterpolator(self.df, filename=filename, is_full=self.is_full) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 158, in df self._df = self.read_hdf() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 109, in read_hdf df = self.write_hdf(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 113, in write_hdf df = self.get_df(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 117, in get_df df = self.compute_additional_columns(df) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/mist/models.py", line 84, in compute_additional_columns df["feh"] = df["log_surf_z"] - np.log10(df["surface_h1"]) - np.log10(0.0181) # Aaron Dotter says File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/common.py", line 65, in new_method return method(self, other) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/init.py", line 343, in wrapper result = arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 190, in arithmetic_op res_values = na_arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 150, in na_arithmetic_op result = masked_arith_op(left, right, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 92, in masked_arith_op result[mask] = op(xrav[mask], yrav[mask]) TypeError: unsupported operand type(s) for -: 'str' and 'float'

====================================================================== ERROR: isochrones.tests.tests.test_closest_eep

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 107, in read_hdf df = pd.read_hdf(h5file, path) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/io/pytables.py", line 387, in read_hdf raise FileNotFoundError(f"File {path_or_buf} does not exist") FileNotFoundError: File /home/linj/.isochrones/mist/mist_v1.2_vvcrit0.4_full_isos.h5 does not exist

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 143, in na_arithmetic_op result = expressions.evaluate(op, left, right) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/computation/expressions.py", line 233, in evaluate return _evaluate(op, op_str, a, b) # type: ignore File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/computation/expressions.py", line 119, in _evaluate_numexpr result = _evaluate_standard(op, op_str, a, b) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/computation/expressions.py", line 68, in _evaluate_standard return op(a, b) TypeError: unsupported operand type(s) for -: 'str' and 'float'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/tests.py", line 24, in test_closest_eep _check_closest_eep(mist, n=n) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/tests.py", line 65, in _check_closest_eep eeps = [ File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/tests.py", line 66, in ic.get_eep(m, a, f, return_nan=True, resid_tol=resid_tol, accurate=True) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 509, in get_eep return self.get_eep_accurate(mass, age, feh, **kwargs) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 558, in get_eep_accurate while np.isnan(self.mass_age_resid(eep0, mass, age, feh)): File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 712, in mass_age_resid mass_interp = self.interp_value([eep, age, feh], ["initial_mass"]) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 400, in interp_value return self.model_grid.interp(pars, props) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 136, in interp self._interp = DFInterpolator(self.df, filename=filename, is_full=self.is_full) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 158, in df self._df = self.read_hdf() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 109, in read_hdf df = self.write_hdf(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 113, in write_hdf df = self.get_df(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 117, in get_df df = self.compute_additional_columns(df) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/mist/models.py", line 84, in compute_additional_columns df["feh"] = df["log_surf_z"] - np.log10(df["surface_h1"]) - np.log10(0.0181) # Aaron Dotter says File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/common.py", line 65, in new_method return method(self, other) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/init.py", line 343, in wrapper result = arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 190, in arithmetic_op res_values = na_arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 150, in na_arithmetic_op result = masked_arith_op(left, right, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 92, in masked_arith_op result[mask] = op(xrav[mask], yrav[mask]) TypeError: unsupported operand type(s) for -: 'str' and 'float'

====================================================================== ERROR: isochrones.tests.tests.test_spec

Traceback (most recent call last): File "/home/linj/anaconda3/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/tests.py", line 29, in test_spec _check_spec(mist) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/tests/tests.py", line 124, in _check_spec eep = ic.get_eep(1.0, 9.6, 0.1, accurate=True) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 509, in get_eep return self.get_eep_accurate(mass, age, feh, **kwargs) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 558, in get_eep_accurate while np.isnan(self.mass_age_resid(eep0, mass, age, feh)): File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 712, in mass_age_resid mass_interp = self.interp_value([eep, age, feh], ["initial_mass"]) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 400, in interp_value return self.model_grid.interp(pars, props) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 136, in interp self._interp = DFInterpolator(self.df, filename=filename, is_full=self.is_full) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 158, in df self._df = self.read_hdf() File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 109, in read_hdf df = self.write_hdf(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/grid.py", line 113, in write_hdf df = self.get_df(orig=orig) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/models.py", line 117, in get_df df = self.compute_additional_columns(df) File "/home/linj/anaconda3/lib/python3.9/site-packages/isochrones/mist/models.py", line 84, in compute_additional_columns df["feh"] = df["log_surf_z"] - np.log10(df["surface_h1"]) - np.log10(0.0181) # Aaron Dotter says File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/common.py", line 65, in new_method return method(self, other) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/init.py", line 343, in wrapper result = arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 190, in arithmetic_op res_values = na_arithmetic_op(lvalues, rvalues, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 150, in na_arithmetic_op result = masked_arith_op(left, right, op) File "/home/linj/anaconda3/lib/python3.9/site-packages/pandas/core/ops/array_ops.py", line 92, in masked_arith_op result[mask] = op(xrav[mask], yrav[mask]) TypeError: unsupported operand type(s) for -: 'str' and 'float' -------------------- >> begin captured logging << -------------------- isochrones: DEBUG: Building ObservationTree... --------------------- >> end captured logging << ---------------------

Ran 33 tests in 223.684s

FAILED (errors=12)

jmbrewer commented 1 year ago

I'm having a similar set of errors starting from scratch with python 3.10:

`Ran 33 tests in 183.888s

FAILED (errors=10, failures=2)`

I had more errors just trying to add to an existing 3.8 environment, so followed the advice to create a custom isochrones environment.
isochrones_nosetest_log.txt I

jmbrewer commented 1 year ago

Based on @timothydmorton's suggestion in another issue, I deleted my ~/.isochrones directory and tried again after installing multinest and pymultinest. (I have installed earlier versions in the past)

This time there were just two failures:

====================================================================== ERROR: Failure: ModuleNotFoundError (No module named 'flaky')

Traceback (most recent call last): File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/nose/loader.py", line 416, in loadTestsFromName module = self.importer.importFromPath( File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/imp.py", line 235, in load_module return load_source(name, filename, file) File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/imp.py", line 172, in load_source module = _load(spec) File "", line 719, in _load File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/isochrones/tests/test_fits.py", line 7, in from flaky import flaky ModuleNotFoundError: No module named 'flaky'

====================================================================== ERROR: Failure: ModuleNotFoundError (No module named 'pytest')

Traceback (most recent call last): File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/nose/loader.py", line 416, in loadTestsFromName module = self.importer.importFromPath( File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/imp.py", line 235, in load_module return load_source(name, filename, file) File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/imp.py", line 172, in load_source module = _load(spec) File "", line 719, in _load File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/isochrones/tests/test_query.py", line 3, in import pytest ModuleNotFoundError: No module named 'pytest'

Ran 33 tests in 783.172s

FAILED (errors=2)

I pip installed bothe modules and retested, this time getting:

====================================================================== FAIL: Testing with first entry from Gaia DR1 TGAS table

Traceback (most recent call last): File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/opt/anaconda/anaconda3/envs/isochrones/lib/python3.10/site-packages/isochrones/tests/test_query.py", line 38, in test_queries assert tm.get_id() == b("03000819+0014074") # force byte literal b/c that's what gets returned AssertionError

Ran 34 tests in 121.069s

FAILED (failures=1)