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Fatal Error on small dataset #18

Open jmolyneuxEcology opened 10 months ago

jmolyneuxEcology commented 10 months ago

Hi Timothy

I saw another post regarding fatal errors with coancestry using large dataset after upgrading R (#16). I am trying to run it on a small dataset that has previously been well within its capabilities, 181 individuals with 10 loci, and are coming up with the same issues. Any help would be greatly appreciated.

Regards Jenny

timothyfrasier commented 10 months ago

Hi Jenny:

Do you get an error when you analyze the example data set?

-Tim

Timothy R. Frasier Coordinator: Forensic Sciences Program Professor: Biology Saint Mary's University 923 Robie Street Halifax, Nova Scotia B3H 3C3 Canada Tel: (902) 491-6382 E-mail: @.*** frasierlab.ca

From: jmolyneuxEcology @.> Sent: Friday, September 8, 2023 12:15 AM To: timothyfrasier/related @.> Cc: Subscribed @.***> Subject: [timothyfrasier/related] Fatal Error on small dataset (Issue #18)

Hi Timothy

I saw another post regarding fatal errors with coancestry using large dataset after upgrading R (#16https://github.com/timothyfrasier/related/issues/16). I am trying to run it on a small dataset that has previously been well within its capabilities, 181 individuals with 10 loci, and are coming up with the same issues. Any help would be greatly appreciated.

Regards Jenny

— Reply to this email directly, view it on GitHubhttps://github.com/timothyfrasier/related/issues/18, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AA3NYWKP2FI2JVYC5XMOIXTXZKET5ANCNFSM6AAAAAA4PYD7BA. You are receiving this because you are subscribed to this thread.Message ID: @.***>

jmolyneuxEcology commented 10 months ago

Hi Tim

Yes, it's fine up until I run coancestry analysis. It was also doing it with the example data you provided. I found a work around though, I installed an older version of R on another machine and it worked fine.

Regards, Jenny

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From: timothyfrasier @.> Sent: Saturday, September 9, 2023 4:28:40 AM To: timothyfrasier/related @.> Cc: jmolyneuxEcology @.>; Author @.> Subject: Re: [timothyfrasier/related] Fatal Error on small dataset (Issue #18)

Hi Jenny:

Do you get an error when you analyze the example data set?

-Tim

Timothy R. Frasier Coordinator: Forensic Sciences Program Professor: Biology Saint Mary's University 923 Robie Street Halifax, Nova Scotia B3H 3C3 Canada Tel: (902) 491-6382 E-mail: @.*** frasierlab.ca

From: jmolyneuxEcology @.> Sent: Friday, September 8, 2023 12:15 AM To: timothyfrasier/related @.> Cc: Subscribed @.***> Subject: [timothyfrasier/related] Fatal Error on small dataset (Issue #18)

Hi Timothy

I saw another post regarding fatal errors with coancestry using large dataset after upgrading R (#16https://github.com/timothyfrasier/related/issues/16). I am trying to run it on a small dataset that has previously been well within its capabilities, 181 individuals with 10 loci, and are coming up with the same issues. Any help would be greatly appreciated.

Regards Jenny

— Reply to this email directly, view it on GitHubhttps://github.com/timothyfrasier/related/issues/18, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AA3NYWKP2FI2JVYC5XMOIXTXZKET5ANCNFSM6AAAAAA4PYD7BA. You are receiving this because you are subscribed to this thread.Message ID: @.***>

— Reply to this email directly, view it on GitHubhttps://github.com/timothyfrasier/related/issues/18#issuecomment-1712070285, or unsubscribehttps://github.com/notifications/unsubscribe-auth/BCNXSOBNSTEAIOQIT6U2G4LXZNPVRANCNFSM6AAAAAA4PYD7BA. You are receiving this because you authored the thread.Message ID: @.***>

timothyfrasier commented 10 months ago

Hi Jenny:

Ok, thanks for letting me know.

-Tim

Timothy R. Frasier Coordinator: Forensic Sciences Program Professor: Biology Saint Mary's University 923 Robie Street Halifax, Nova Scotia B3H 3C3 Canada Tel: (902) 491-6382 E-mail: @.*** frasierlab.ca

From: jmolyneuxEcology @.> Sent: Friday, September 8, 2023 6:36 PM To: timothyfrasier/related @.> Cc: Timothy Frasier @.>; Comment @.> Subject: Re: [timothyfrasier/related] Fatal Error on small dataset (Issue #18)

Hi Tim

Yes, it's fine up until I run coancestry analysis. It was also doing it with the example data you provided. I found a work around though, I installed an older version of R on another machine and it worked fine.

Regards, Jenny

Get Outlook for Androidhttps://aka.ms/AAb9ysg

From: timothyfrasier @.> Sent: Saturday, September 9, 2023 4:28:40 AM To: timothyfrasier/related @.> Cc: jmolyneuxEcology @.>; Author @.> Subject: Re: [timothyfrasier/related] Fatal Error on small dataset (Issue #18)

Hi Jenny:

Do you get an error when you analyze the example data set?

-Tim

Timothy R. Frasier Coordinator: Forensic Sciences Program Professor: Biology Saint Mary's University 923 Robie Street Halifax, Nova Scotia B3H 3C3 Canada Tel: (902) 491-6382 E-mail: @.*** frasierlab.ca

From: jmolyneuxEcology @.> Sent: Friday, September 8, 2023 12:15 AM To: timothyfrasier/related @.> Cc: Subscribed @.***> Subject: [timothyfrasier/related] Fatal Error on small dataset (Issue #18)

Hi Timothy

I saw another post regarding fatal errors with coancestry using large dataset after upgrading R (#16https://github.com/timothyfrasier/related/issues/16). I am trying to run it on a small dataset that has previously been well within its capabilities, 181 individuals with 10 loci, and are coming up with the same issues. Any help would be greatly appreciated.

Regards Jenny

— Reply to this email directly, view it on GitHubhttps://github.com/timothyfrasier/related/issues/18, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AA3NYWKP2FI2JVYC5XMOIXTXZKET5ANCNFSM6AAAAAA4PYD7BA. You are receiving this because you are subscribed to this thread.Message ID: @.***>

— Reply to this email directly, view it on GitHubhttps://github.com/timothyfrasier/related/issues/18#issuecomment-1712070285, or unsubscribehttps://github.com/notifications/unsubscribe-auth/BCNXSOBNSTEAIOQIT6U2G4LXZNPVRANCNFSM6AAAAAA4PYD7BA. You are receiving this because you authored the thread.Message ID: @.***>

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