timothyfrasier
commented
2 days ago Hi Keiler:
I have gone through the code, and there is not a place in there when I can change that location. My suggestion would be to create the noted directory and put a copy of gfortran there. I know that is a clunky work-around, but I can't come up with a better one at the moment.
-Tim
Timothy R. Frasier Coordinator: Forensic Sciences Program Professor: Biology Saint Mary's University 923 Robie Street Halifax, Nova Scotia B3H 3C3 Canada Tel: (902) 491-6382 E-mail: @.*** frasierlab.ca
From: Keiler Collier @.> Sent: Tuesday, November 26, 2024 1:49 AM To: timothyfrasier/related @.> Cc: Subscribed @.***> Subject: [timothyfrasier/related] Problems with gfortran location in installation? (OSX) (Issue #24)
Hello,
I am attempting to compile and load Related on a OSX system (M2 chip, if that makes a difference).
I initially followed the instructions on this Repo's README to the letter, but when I ran the final install command in Rstudio ('install.packages("~/related_1.0.tar.gz", repos = NULL, type = "source")', it failed with the following message:
sh: /opt/gfortran/bin/gfortran: Not a directory Warning in system(paste(fc, "--version"), intern = TRUE) : running command '/opt/gfortran/bin/gfortran -arch arm64 --version' had status 126 using Fortran compiler: ‘NA’ using SDK: ‘MacOSX14.0.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c family_sim.c -o family_sim.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c related.f90 -o related.o make: /opt/gfortran/bin/gfortran: No such file or directory make: *** [related.o] Error 1 ERROR: compilation failed for package ‘related’ removing ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/related’
Looking at the first error, I assumed it was a problem with my gfortran installation. I confirmed that I had a working version at /opt/homebrew/bin/gfortran, and then added that location to my path as well. In both cases, the same error occurs, where the makefile seems to be looking for gfortran at /opt/gfortran/bin/gfortran (where it doesn't exist), causing fatal errors.
Do you have either the whole makefile (so I can use my working fortran to compile the package before installing it), or some suggestions on what's going wrong? Thanks in advance for your time.
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Hello,
I am attempting to compile and load Related on a OSX system (M2 chip, if that makes a difference).
I initially followed the instructions on this Repo's README to the letter, but when I ran the final install command in Rstudio
('install.packages("~/related_1.0.tar.gz", repos = NULL, type = "source")', it failed with the following message:sh: /opt/gfortran/bin/gfortran: Not a directory Warning in system(paste(fc, "--version"), intern = TRUE) : running command '/opt/gfortran/bin/gfortran -arch arm64 --version' had status 126 using Fortran compiler: ‘NA’ using SDK: ‘MacOSX14.0.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c family_sim.c -o family_sim.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c related.f90 -o related.o make: /opt/gfortran/bin/gfortran: No such file or directory make: *** [related.o] Error 1 ERROR: compilation failed for package ‘related’ removing ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/related’
Looking at the first error, I assumed it was a problem with my gfortran installation. I confirmed that I had a working version at
/opt/homebrew/bin/gfortran, and then added that location to my path as well. In both cases, the same error occurs, where the makefile seems to be looking for gfortran at/opt/gfortran/bin/gfortran(where it doesn't exist), causing fatal errors.Do you have either the whole makefile (so I can use my working fortran to compile the package before installing it), or some suggestions on what's going wrong? Thanks in advance for your time.