the package not loading in R 4.2.0 on Mac

MartinBulla commented 2 years ago

Hi Tim,

I have installed the package on Mac Mojave (10.14.6) with R version 4.2.0 (2022-04-22) -- "Vigorous Calisthenics". When loading the package via require(related), I get the following error

loading required package: related Error: package or namespace load failed for ‘related’: package ‘related’ was installed before R 4.0.0: please re-install it

Re-installation of the package does not help. Any thoughts on that?

Looking forward to hearing from you, Martin

timothyfrasier commented 2 years ago

Hi Martin:

Yes, I am aware of this problem. I am going to try to fix it this week, and will get back to you then.

-Tim

Timothy R. Frasier Coordinator: Forensic Sciences Program Professor: Biology Saint Mary's University 923 Robie Street Halifax, Nova Scotia B3H 3C3 Canada Tel: (902) 491-6382 E-mail: @.*** frasierlab.ca

From: Martin Bulla @.> Sent: Tuesday, May 31, 2022 3:47 AM To: timothyfrasier/related @.> Cc: Subscribed @.***> Subject: [timothyfrasier/related] the package not loading in R 4.2.0 on Mac (Issue #9)

Hi Tim,

I have installed the package on Mac Mojave (10.14.6) with R version 4.2.0 (2022-04-22) -- "Vigorous Calisthenics". When loading the package via require(related), I get the following error

loading required package: related Error: package or namespace load failed for ‘related’: package ‘related’ was installed before R 4.0.0: please re-install it

Re-installation of the package does not help. Any thoughts on that?

Looking forward to hearing from you, Martin

— Reply to this email directly, view it on GitHubhttps://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Ftimothyfrasier%2Frelated%2Fissues%2F9&data=05%7C01%7Ctimothy.frasier%40smu.ca%7C55ba8dc7a7d24734879808da42d15d6e%7C060b02ae57754360abbae2e29cca6627%7C1%7C0%7C637895764228457372%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=hE%2BBIuhvq1iaNge2fh9G%2BsxC51%2BYwkKa8wpUzWujsEg%3D&reserved=0, or unsubscribehttps://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAA3NYWLPTINKC3CGUVAAG6TVMWYWJANCNFSM5XMOK6DA&data=05%7C01%7Ctimothy.frasier%40smu.ca%7C55ba8dc7a7d24734879808da42d15d6e%7C060b02ae57754360abbae2e29cca6627%7C1%7C0%7C637895764228457372%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=MxyOvkupYbZ%2FPMqpwrjjnjsF31lYBTIPANco2v80U2g%3D&reserved=0. You are receiving this because you are subscribed to this thread.Message ID: @.***>

MartinBulla commented 2 years ago

Super, Tim. I appreciate it and wish you that the fixing goes smoothly.

timothyfrasier commented 2 years ago

Hi Martin:

First, I apologize that it has taken me so long to get around to updating my related R package for R version 4.0 and higher. However, I have done so now, and have updated the installation instructions on a Mac. They are now thoroughly explained on the Github site herehttps://github.com/timothyfrasier/related.

Please let me know if you still run into any problems.

Sincerely, Tim Frasier

Timothy R. Frasier Coordinator - Forensic Sciences Program Associate Professor - Department of Biology Saint Mary's University 923 Robie Street Halifax, NS B3H 3C3, Canada Email: @.**@.> Tel: (902) 491-6382 www.frasierlab.cahttp://frasierlab.ca

On May 31, 2022, at 3:47 AM, Martin Bulla @.**@.>> wrote:

Hi Tim,

I have installed the package on Mac Mojave (10.14.6) with R version 4.2.0 (2022-04-22) -- "Vigorous Calisthenics". When loading the package via require(related), I get the following error

loading required package: related Error: package or namespace load failed for ‘related’: package ‘related’ was installed before R 4.0.0: please re-install it

Re-installation of the package does not help. Any thoughts on that?

Looking forward to hearing from you, Martin

— Reply to this email directly, view it on GitHubhttps://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Ftimothyfrasier%2Frelated%2Fissues%2F9&data=05%7C01%7Ctimothy.frasier%40smu.ca%7C55ba8dc7a7d24734879808da42d15d6e%7C060b02ae57754360abbae2e29cca6627%7C1%7C0%7C637895764228457372%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=hE%2BBIuhvq1iaNge2fh9G%2BsxC51%2BYwkKa8wpUzWujsEg%3D&reserved=0, or unsubscribehttps://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAA3NYWLPTINKC3CGUVAAG6TVMWYWJANCNFSM5XMOK6DA&data=05%7C01%7Ctimothy.frasier%40smu.ca%7C55ba8dc7a7d24734879808da42d15d6e%7C060b02ae57754360abbae2e29cca6627%7C1%7C0%7C637895764228457372%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=MxyOvkupYbZ%2FPMqpwrjjnjsF31lYBTIPANco2v80U2g%3D&reserved=0. You are receiving this because you are subscribed to this thread.Message ID: @.***>

MartinBulla commented 2 years ago

Hi Tim,

Thanks a lot for this. It worked.

I was getting the following error [image: image.png] but fixed it by adding type ="source". Perhaps it is worth adding to the manual: install.packages("~/Desktop/related_1.0.tar", repos = NULL,type="source")

Best, Martin

On Fri, 10 Jun 2022 at 16:15, timothyfrasier @.***> wrote:

Hi Martin:

First, I apologize that it has taken me so long to get around to updating my related R package for R version 4.0 and higher. However, I have done so now, and have updated the installation instructions on a Mac. They are now thoroughly explained on the Github site here< https://github.com/timothyfrasier/related>.

Please let me know if you still run into any problems.

Sincerely, Tim Frasier

Timothy R. Frasier Coordinator - Forensic Sciences Program Associate Professor - Department of Biology Saint Mary's University 923 Robie Street Halifax, NS B3H 3C3, Canada Email: @.**@.> Tel: (902) 491-6382 www.frasierlab.cahttp://frasierlab.ca

On May 31, 2022, at 3:47 AM, Martin Bulla @.**@.>> wrote:

Hi Tim,

I have installed the package on Mac Mojave (10.14.6) with R version 4.2.0 (2022-04-22) -- "Vigorous Calisthenics". When loading the package via require(related), I get the following error

loading required package: related Error: package or namespace load failed for ‘related’: package ‘related’ was installed before R 4.0.0: please re-install it

Re-installation of the package does not help. Any thoughts on that?

Looking forward to hearing from you, Martin

— Reply to this email directly, view it on GitHub< https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Ftimothyfrasier%2Frelated%2Fissues%2F9&data=05%7C01%7Ctimothy.frasier%40smu.ca%7C55ba8dc7a7d24734879808da42d15d6e%7C060b02ae57754360abbae2e29cca6627%7C1%7C0%7C637895764228457372%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=hE%2BBIuhvq1iaNge2fh9G%2BsxC51%2BYwkKa8wpUzWujsEg%3D&reserved=0>, or unsubscribe< https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAA3NYWLPTINKC3CGUVAAG6TVMWYWJANCNFSM5XMOK6DA&data=05%7C01%7Ctimothy.frasier%40smu.ca%7C55ba8dc7a7d24734879808da42d15d6e%7C060b02ae57754360abbae2e29cca6627%7C1%7C0%7C637895764228457372%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=MxyOvkupYbZ%2FPMqpwrjjnjsF31lYBTIPANco2v80U2g%3D&reserved=0>.

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kepra3 commented 1 year ago

Hi Tim,

Appreciate the info for installing on Mac. I followed all the steps but I do come to an error.

installing source package ‘related’ ... using staged installation libs Error in if (nzchar(SHLIB_LIBADD)) SHLIB_LIBADD else character() : argument is of length zero
removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/related’ Warning in install.packages : installation of package ‘/Users/kprata/Dropbox/related_1.0.tar.gz’ had non-zero exit status

Not sure which software this is having an issue with. I do have many different locations for software you mention (e.g., gcc/gfortran) so I wonder if that could be a problem.

Any help on resolving this would be highly appreciated!

Cheers, Kat

timothyfrasier commented 1 year ago

Hi Kat:

Could you please send me the exact commands/process that you used for installation. That would help me trouble-shoot.

-TIm

Timothy R. Frasier Coordinator: Forensic Sciences Program Professor: Biology Saint Mary's University 923 Robie Street Halifax, Nova Scotia B3H 3C3 Canada Tel: (902) 491-6382 E-mail: @.*** frasierlab.ca

From: Kat Prata @.> Sent: Wednesday, November 30, 2022 1:25 AM To: timothyfrasier/related @.> Cc: Timothy Frasier @.>; Comment @.> Subject: Re: [timothyfrasier/related] the package not loading in R 4.2.0 on Mac (Issue #9)

Hi Tim,

Appreciate the info for installing on Mac. I followed all the steps but I do come to an error.

installing source package ‘related’ ... using staged installation libs Error in if (nzchar(SHLIB_LIBADD)) SHLIB_LIBADD else character() : argument is of length zero
removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/related’ Warning in install.packages : installation of package ‘/Users/kprata/Dropbox/related_1.0.tar.gz’ had non-zero exit status

Not sure which software this is having an issue with. I do have and have had many different locations for software you mention (e.g., gcc/gfortran) so I wonder if that could be a problem.

Any help on resolving this would be highly appreciated!

Cheers, Kat

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kepra3 commented 1 year ago

Hi Tim,

I already had xcode-select so did not re-install this. I installed XQuartz from the link you provided, installed the appropriate version of gfortran (I have an intel core processor) and adjusted the PATH, I updated my Rstudio, I have R 4.2.0. I re-installed devtools and ggplot2. I downloaded all the .dylib files and placed these in /usr/local/lib/ then downloaded the related.tar.qz and installed from Package Archive File.

versions:

xcode-select version 2373.
GNU Fortran (GCC) 4.8.5
XQuartz 2.8.2 (xorg-server 1.20.14)
RStudio 2022.07.2
devtools_2.4.5
ggplot2_3.4.0

Also, maybe to note within my /usr/local/lib many of the files appear to be hyperlinked to my homebrew 'Cellar', e.g.,

-rw-r--r--@   1 kprata  staff   1.5M 30 Nov 14:42 libgfortran.3.dylib
lrwxr-xr-x    1 kprata  admin    45B 10 Aug  2021 libgif.7.2.0.dylib -> ../Cellar/giflib/5.2.1/lib/libgif.7.2.0.dylib

Except those .dylib files I placed there, which are also not executable.

Cheers, Kat

timothyfrasier / related

the package not loading in R 4.2.0 on Mac #9