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timpeters82 / DMRcate-devel

devel git for DMRcate
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EPICv2 - rmSNPandCH - XY Removal #7

Closed ReWeda closed 1 month ago

ReWeda commented 3 months ago

Hello there,

Context: DMRcate v.3.0.3 DMRcatedata v.2.22.0 EPICv2manifest v0.99.7 (from Peters et al. (2024))

When I run the rmSNPandCH function on uncollapsed M values (with the full probe names still present) while attempting to remove XY probes (rmXY = TRUE), I encounter the following error:

Error in exists(EPICv2manifest) : invalid first argument

No error returned setting rmXY = FALSE

Right now, I'm bypassing the error manually removing XY probes from the M values matrix.

timpeters82 commented 3 months ago

Well spotted, thanks Davide. "EPICv2manifest" wasn't in quotes.

Git is now updated and should propagate to release and devel.

Cheers, Tim