Add Snakemake workflow profile as override of local profile

timtroendle / cookiecutter-reproducible-research

A cookiecutter template for reproducible research projects using Python, Snakemake, and Pandoc.

MIT License

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Add Snakemake workflow profile as override of local profile #29

Closed timtroendle closed 8 months ago

timtroendle commented 1 year ago

Snakemake 7.29.0 added the option to use a workflow profile that overrides local profiles. By default, this is profiles/default. We should use this mechanism to allow for local profiles.

As the workflow profile default works for us out of the box, we only need to update to 7.29.0. We can remove the env variable in the default environment.