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tinevez / TrackMate-extras

Some extra modules for TrackMate
GNU General Public License v3.0
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Does it work with the newest version of TrackMate? #8

Closed a-bio90 closed 3 years ago

a-bio90 commented 3 years ago

Hi, I extensively used the Extra for TrackMate to export detection as ROIs. Since I updated to TrackMate v7 it give errors (reported below) and it doesn't seem to work. I am far from being an expert in plugins management, so is there an easy way to solve this issue? Thank you

java.util.concurrent.ExecutionException: java.lang.AbstractMethodError: Method fiji/plugin/trackmate/extra/spotanalyzer/SpotMultiChannelIntensityAnalyzerFactory.getAnalyzer(Lnet/imagej/ImgPlus;II)Lfiji/plugin/trackmate/features/spot/SpotAnalyzer; is abstract at java.util.concurrent.FutureTask.report(FutureTask.java:122) at java.util.concurrent.FutureTask.get(FutureTask.java:192) at fiji.plugin.trackmate.features.SpotFeatureCalculator.computeSpotFeaturesAgent(SpotFeatureCalculator.java:227) at fiji.plugin.trackmate.features.SpotFeatureCalculator.process(SpotFeatureCalculator.java:119) at fiji.plugin.trackmate.TrackMate.computeSpotFeatures(TrackMate.java:166) at fiji.plugin.trackmate.gui.wizard.descriptors.SpotFilterDescriptor$1.run(SpotFilterDescriptor.java:144) at fiji.plugin.trackmate.gui.wizard.WizardController$1.run(WizardController.java:192) Caused by: java.lang.AbstractMethodError: Method fiji/plugin/trackmate/extra/spotanalyzer/SpotMultiChannelIntensityAnalyzerFactory.getAnalyzer(Lnet/imagej/ImgPlus;II)Lfiji/plugin/trackmate/features/spot/SpotAnalyzer; is abstract at fiji.plugin.trackmate.extra.spotanalyzer.SpotMultiChannelIntensityAnalyzerFactory.getAnalyzer(SpotMultiChannelIntensityAnalyzerFactory.java) at fiji.plugin.trackmate.features.SpotFeatureCalculator$1.call(SpotFeatureCalculator.java:204) at fiji.plugin.trackmate.features.SpotFeatureCalculator$1.call(SpotFeatureCalculator.java:190) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Exception in thread "TrackMate action thread" java.lang.AbstractMethodError: Method fiji/plugin/trackmate/extra/action/RoiExporter$Factory.create()Lfiji/plugin/trackmate/action/TrackMateAction; is abstract at fiji.plugin.trackmate.extra.action.RoiExporter$Factory.create(RoiExporter.java) at fiji.plugin.trackmate.gui.components.ActionChooserPanel$1$1.run(ActionChooserPanel.java:87)

tinevez commented 3 years ago

Hello.

No need for this: the features in this extension have been ported to the v7. I am going to archive this repo and remove mentions of it.