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tingchenlab / PerM

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Couldn't mapped Illumina reads with length > 64 and odd read length #35

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
In versions before 0.2.9.7 version, there is a defect that Illumina reads with 
longer than 64 bp, ex: 75bp, PerM only used the first 74 bp to do the mapping. 
This problem is fixed in 0.2.9.9. Moreover, PerM can now be full sensitive upto 
9 mismatches for long reads, by using seed F4. This is because internally, PerM 
find hit in each half of the reads independently and do the checking. 

Download the version 0.2.9.9 or later PerM.

Original issue reported on code.google.com by Chen.Yan...@gmail.com on 30 Jul 2010 at 6:06