I'm trying to run reCAT on two datasets of around 3000 and 5000 cells, I already subset the genes to the list of cell cycle genes but I cannot see any results.
In other words the function get_ordIndex keeps running without end.
Do you have an estimation of the running time?
I tried already the following call to the function:
get_ordIndex(CC_exonic_read, threadnum = 10, step_size = 2)
get_ordIndex(CC_exonic_read, threadnum = 10, step_size = 5)
Hi,
I'm trying to run reCAT on two datasets of around 3000 and 5000 cells, I already subset the genes to the list of cell cycle genes but I cannot see any results. In other words the function get_ordIndex keeps running without end.
Do you have an estimation of the running time?
I tried already the following call to the function: get_ordIndex(CC_exonic_read, threadnum = 10, step_size = 2) get_ordIndex(CC_exonic_read, threadnum = 10, step_size = 5)
Thanks a lot Best, Andrea