search

tischi / fiji-script-convertBinProject

1 stars 0 forks source link

XYZ-projections: scaling #3

Open HenningEMBL opened 7 years ago

HenningEMBL commented 7 years ago

Hi Tischi, the projections are very helpful to check registration output, but it would be nice to add an option to specify separate scaling for xy and z. My data has a much poorer z compared to xy resolution, which makes the images look squished.

image

Thanks for your help!

tischi commented 7 years ago

Makes sense! This is nothing that I can do quickly though, because this is done by a java plugin that I did not write myself. So I would have to redo the plugin. I will put it on my to-do list, but not sure when I'll have it done.

tischi commented 7 years ago

You can achieve a different scaling in x,y,z by choosing the binning option. If you want to enlarge z, you could also put for instance 0.25 as binning in z, which would enlarge z by a factor of 4.

tischi commented 7 years ago

for the sake and speed and disk space you should of course rather use >1 binning because otherwise you are enlarging the data, so you could also downsample in x&y to make it isotropic