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tischi / i2k-2020-s3-zarr-workshop

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Uploaded data set #17

Open tischi opened 3 years ago

tischi commented 3 years ago

@joshmoore @will-moore

        OMEZarrS3Reader reader = new OMEZarrS3Reader( "https://s3.embl.de", "us-west-2", "i2k-2020" );
        SpimData em = reader.read( "em-raw.ome.zarr" );
        SpimData myosin = reader.read( "prospr-myosin.ome.zarr" );
joshmoore commented 3 years ago

@will-moore: I assume https://github.com/napari/napari/pull/1018 et al would be useful in napari to provide the overlay of the two volumes.

will-moore commented 3 years ago

Don't know what's needed here? Are the 2 spim images not correctly aligned? Not obvious from that PR how to apply a transform but I guess some reading the source code would reveal it.