Currently combine_fqs uses {sample}.{type} as the read group (RG) for each BAM file. Users may want to specify their own read groups. The best way to handle this would be to add a new field in units.csv and then create a function get_read_group in in common.smk that can get the RG depending on the sample.
tjbencomo
commented
4 years ago
Currently
combine_fqsuses{sample}.{type}as the read group (RG) for each BAM file. Users may want to specify their own read groups. The best way to handle this would be to add a new field inunits.csvand then create a functionget_read_groupin incommon.smkthat can get the RG depending on the sample.