tjbencomo / ngs-pipeline

Pipeline for Somatic Variant Calling with WES and WGS data
MIT License
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Multiplexed samples #45

Closed tjbencomo closed 4 years ago

tjbencomo commented 4 years ago

Close #35 and #42. Adds functionality to handle multiplexed samples that were sequenced over different lanes. Each sample should now specify its read group in the readgroup column of units.csv. If only one lane was used, set the value to something like rg1.