Allow naming of either upper or lower case Normal/Tumor sample types

tjbencomo / ngs-pipeline

Pipeline for Somatic Variant Calling with WES and WGS data

MIT License

20 stars 4 forks source link

Allow naming of either upper or lower case Normal/Tumor sample types #46

Open tjbencomo opened 4 years ago

tjbencomo commented 4 years ago

Right now the pipeline requires sample type be specified as normal or tumor - the upper case versions cause an error. Call tolower() on the units data frame in common.smk to prevent this from mattering