This pull request adds panel of normal (PON) functionality to the pipeline. Users can choose to use a PON when calling variants with Mutect2. The PON can be built from scratch using the normal samples that will be analyzed or from a previously generated panel of normals. This update also cleans up the config file.
This pull request adds panel of normal (PON) functionality to the pipeline. Users can choose to use a PON when calling variants with Mutect2. The PON can be built from scratch using the normal samples that will be analyzed or from a previously generated panel of normals. This update also cleans up the config file.