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tjbencomo / ngs-pipeline

Pipeline for Somatic Variant Calling with WES and WGS data
MIT License
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Parallelize BQSR and MarkDups + SortSam #59

Closed tjbencomo closed 3 years ago

tjbencomo commented 4 years ago

Use scatter gather for BQSR and the GATK Spark tools for MarkDups + SortSam

tjbencomo commented 4 years ago

Also parallelize Mutect2 PON rule