Add option in the config to use more stringent filtering threshold to retain variants after FilterMutectCalls finishes.
This could be an if statement in combine_mafs.py that would require a minimum depth for every SNV and minimum number of reads for every alternate allele
Add option in the config to use more stringent filtering threshold to retain variants after FilterMutectCalls finishes.
This could be an if statement in
combine_mafs.pythat would require a minimum depth for every SNV and minimum number of reads for every alternate allele