Install on Linux

[AlkaidWang]

Following the instruction in README and the package has installed locally by

install.packages("TCGAplot-7.0.1.tar.gz",repo=NULL,type="source") and succeeded:

############################################ 将程序包安装入‘/usr/lib64/R/library’ (因为‘lib’没有被指定) untar2(tarfile, files, list, exdir, restore_times)里有警告: skipping pax global extended headers

• installing source package ‘TCGAplot’ ... using staged installation R data byte-compile and prepare package for lazy loading ** help * installing help indices converting help for package ‘TCGAplot’ finding HTML links ... 好了 gene_MSI_radar html gene_TMB_radar html gene_age html gene_checkpoint_heatmap html gene_chemokine_heatmap html gene_coexp_heatmap html gene_deg_heatmap html gene_gender html gene_gene_scatter html gene_gsea_go html gene_gsea_kegg html gene_immucell_heatmap html gene_immuinhibitor_heatmap html gene_immunescore_heatmap html gene_immunescore_triangle html gene_immustimulator_heatmap html gene_methylation_scatter html gene_receptor_heatmap html gene_stage html get_cancers html get_immu_ratio html get_immuscore html get_meta html get_methy html get_msi html get_paired_cancers html get_paired_tpm html get_tmb html get_tpm html methy_kmplot html paired_boxplot html pan_boxplot html pan_forest html pan_paired_boxplot html pipe html tcga_boxplot html tcga_kmplot html tcga_roc html building package indices installing vignettes testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location testing if installed package keeps a record of temporary installation path
• DONE (TCGAplot) Making 'packages.html' ... 做完了。 ################################################################################

However, it has not been installed completely:

pan_boxplot("TP53") 错误于pan_boxplot("TP53"): 找不到对象'tpm'

Please help me how to install on Linux platform, thanks

BR, Bo

[AlkaidWang]

OK, I got it. I shouldn't use the "TCGAplot-7.0.1.tar.gz" but the "TCGAplot_7.0.1.zip" and decompressing it first. Then it works.