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tjhwangxiong / TCGAplot

A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.
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Specify cancer type in gene_chemokine_heatmap #19

Closed xiw588 closed 1 month ago

xiw588 commented 4 months ago

Hi, Is there any efficient way to specify cancer type in gene_chemokine_heatmap, gene_receptor_heatmap, etc. rather than plotting the pan-cancer?

Thanks

tjhwangxiong commented 3 months ago

You could get these data and plot in detail. All data could be extract ED using corresponding functions included.

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--------------原始邮件-------------- 发件人："xiw588 @.>; 发送时间：2024年8月7日(星期三) 上午6:12 收件人："tjhwangxiong/TCGAplot" @.>; 抄送："Subscribed @.***>; 主题：[tjhwangxiong/TCGAplot] Specify cancer type in gene_chemokine_heatmap (Issue #19)

Hi, Is there any efficient way to specify cancer type in gene_chemokine_heatmap, gene_receptor_heatmap, etc. rather than plotting the pan-cancer?

Thanks

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xiw588 commented 3 months ago

Thanks for the response, but what do you mean by extracting ED? Can you provide a toy example of the steps? Thanks a lot