A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.
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A question for parameters in gs_pan_... functions #22
Hi, as a undergraduate who just began to try bioinformatics, I really appreciate your great contributions. But I have a small question, the parameter "geneset_alias" represents what? Where can I find them? If I want to use a self-defined gene set using "c("gene1", "gene2", ...)" at "geneset", what should I put in "geneset_alias"?
Looking forward to your response!
Hi, as a undergraduate who just began to try bioinformatics, I really appreciate your great contributions. But I have a small question, the parameter "geneset_alias" represents what? Where can I find them? If I want to use a self-defined gene set using "c("gene1", "gene2", ...)" at "geneset", what should I put in "geneset_alias"? Looking forward to your response!