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tjhwangxiong / TCGAplot

A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.
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lncRNA not found #7

Closed HaotingJia1 closed 10 months ago

HaotingJia1 commented 10 months ago

Thanks for your great jobs! i tried several lncRNA and they are not found. any way i can plot lncRNA data? thank you.

pan_boxplot('MALAT1') Error in all_of(): ! Can't subset columns that don't exist. ✖ Column MALAT1 doesn't exist.

tjhwangxiong commented 10 months ago

Only coding genes were included.

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--------------原始邮件-------------- 发件人："HaotingJia1 @.>; 发送时间：2024年1月18日(星期四) 凌晨4:15 收件人："tjhwangxiong/TCGAplot" @.>; 抄送："Subscribed @.***>; 主题：[tjhwangxiong/TCGAplot] lncRNA not found (Issue #7)

Thanks for your great jobs! i tried several lncRNA and they are not found. any way i can plot lncRNA data? thank you.

pan_boxplot('MALAT1') Error in all_of(): ! Can't subset columns that don't exist. ✖ Column MALAT1 doesn't exist.

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