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tjiagoM / spatio-temporal-brain

A Deep Graph Neural Network Architecture for Modelling Spatio-temporal Dynamics in rs-fMRI Data
Apache License 2.0
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data management #19

Closed miladalipour99 closed 1 year ago

miladalipour99 commented 2 years ago

Hi, Nice work and I highly appreciate it. Can you please guide about how to place data in directory if someone doesn't have access to ADNI due to region limitations and wants to use their own dataset, and also is it possible to access to your preprocessed data. I am waiting for your kind reply. Thanks

tjiagoM commented 2 years ago

Hi! Thanks for your interest in our work!

You can see the code I created to load data from the uk biobank and human connectome project (HCP) here: https://github.com/tjiagoM/spatio-temporal-brain/blob/master/datasets.py (including how we preprocessed the data)

You will probably need to know how data loading works with pytorch geometric (https://pytorch-geometric.readthedocs.io/en/latest/notes/create_dataset.html), before looking to this module.

Unfortunately, I cannot give you the preprocessed data from the UK Biobank, but for the HCP you should have free access. Maybe if you email me it would be easier to discuss data sharing, but I'll try to doublecheck what are the rules here.

Hope this helps!

P.S.: I'm currently quite busy in answering to a rebuttal round of a journal at which we submitted this work. As a consequence, I've been changing the code in a branch named dev. As the paper is not yet accepted and includes some changes which are not in the paper I'm not putting this in the main branch for now. However, if you are curious, feel free to check: https://github.com/tjiagoM/spatio-temporal-brain/tree/dev