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tjiagoM / spatio-temporal-brain

A Deep Graph Neural Network Architecture for Modelling Spatio-temporal Dynamics in rs-fMRI Data
Apache License 2.0
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Plot the graph representation #21

Closed windrise closed 1 year ago

windrise commented 2 years ago

I'm interested in your work and appreciate it. Can you tell me about how to visualize the graph representation like the Fig. 1 (or Fig. 6) in your paper. I am looking forward to your kind reply. Thanks in advance.

tjiagoM commented 2 years ago

Hello and thanks for the interest in our work!

With regards to the graph visualisation you mention, you can see my attempts at exploring the graph-tool package here (with short installation instructions): https://github.com/tjiagoM/spatio-temporal-brain/blob/master/post_analysis/graph-tool.ipynb

You can see I tried other visualisation approaches which were not included in the paper using this package. Unfortunately, I found that it was not easy to get something like these plots in a controlled way, and had to manually remove some arrows from the image in Inkscape, as I was not able to do that programmatically.

If you are interested in these type of plots, I recommend you search for "connectogram plot", as there are other tools online. I ended up using this one because of the Python support, but I recognise there are more out there which could be more useful for you.