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tjiangHIT / cuteSV

Long read based human genomic structural variation detection with cuteSV
MIT License
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SV with genotype 0/0 #137

Closed vegetableyu closed 8 months ago

vegetableyu commented 10 months ago

Hi， I wonder how to interpret SV as genotype 0/0. If genotype 0/0 doesn't that mean there is no variation here? All the best, YU

Meltpinkg commented 10 months ago

Hello, @vegetableyu

When there were corresponding SV signatures on the sequencing reads, the SV was reported. In this condition, if the coverage of the SV alleles didn't support it as a homozygous or heterozygous variation, it will be genotyped as 0/0.

Best, Shuqi