Open ggstatgen opened 5 years ago
Thank you for using rMETL and your bug report.
This error is raised by no directory which called
Hi,
I have the same problem when I run the following command :
rMETL detection ../align/mysample.bam /reference/hg38/ref.fa transposons/temp/ transposons/mysample/ -s 2 -x ont
However I manually created the directories transposons/temp/ and transposons/mysample/ before running the command.
Here is the end of the STDOUT with error
2020-08-27 14:23:38,952 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270745v1.
2020-08-27 14:23:38,952 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270748v1.
2020-08-27 14:23:38,952 [INFO] Resolving chromsome chrUn_KI270752v1.
2020-08-27 14:23:38,953 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270752v1.
2020-08-27 14:23:38,955 [INFO] Resolving chromsome chrUn_KI270753v1.
2020-08-27 14:23:38,955 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270753v1.
2020-08-27 14:23:38,955 [INFO] Resolving chromsome chrUn_KI270755v1.
2020-08-27 14:23:38,955 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270755v1.
2020-08-27 14:23:38,956 [INFO] Resolving chromsome chrY_KI270740v1_random.
2020-08-27 14:23:38,956 [INFO] 0 MEI/MED signal loci in the chromsome chrY_KI270740v1_random.
2020-08-27 14:23:39,218 [ERROR] Merging ME signatures failed!
2020-08-27 14:23:39,218 [ERROR] RETCODE 1
2020-08-27 14:23:39,218 [ERROR] STDOUT b"cat: 'transposons/temp/signatures/*': No such file or directory\n"
2020-08-27 14:23:39,218 [ERROR] STDERR None
2020-08-27 14:23:39,218 [ERROR] Exiting
Could you help me? Thanks,
Hello @SegoleneDiry rMETL is designed for python2. Please check your python version. Some suggestions:
Hope this can help!
Tao
Thank you Tao for your answer. Indeed, I was working with Python3... so, I will try with Python2
Hi
I'm having problems to complete the first stage ('detection'). The code terminates with an exception.
A bit of info to help you diagnose the issue.
My command is as follows
This is the beginning of the STDOUT from rMETL:
and this is how it terminates:
Any help would be greatly appreciated.