search

tjiangHIT / rMETL

rMETL - realignment-based Mobile Element insertion detection Tool for Long read
MIT License
15 stars 3 forks source link

Empty potential_ME.fa #9

Open rl4940 opened 2 months ago

rl4940 commented 2 months ago

Hi Dr. Jiang

Thank you for your development! I am running the first rMETL detection and there is an empty output. The log shows the following:

2024-04-28 15:49:23,516 [ERROR] Merging ME signatures failed!
2024-04-28 15:49:23,517 [ERROR] RETCODE 1
2024-04-28 15:49:23,517 [ERROR] STDOUT b'cat: /data/renqgli/project/TGS/sv_calling_50bpmin/rmetl/rmetl_hg38/signatures/*: \xe6\xb2\xa1\xe6\x9c\x89\xe9\x82\xa3\xe4\xb8\xaa\xe6\x96\x87\xe4\xbb\xb6\xe6\x88\x96\xe7\x9b\xae\xe5\xbd\x95\n'
2024-04-28 15:49:23,517 [ERROR] STDERR None
2024-04-28 15:49:23,517 [ERROR] Exiting

It's really frustrating and I do not know how to resolve it. Thanks

Besides is the super long log:

2024-04-28 15:05:15,309 [INFO] Running /data/renqgli/miniconda3/envs/jupyter/bin/rMETL detection /data/renqgli/project/TGS/data/jidingrui/hg38_aln.sorted.bam /data/renqgli/project/refseq/hg38.p14.fa /data/renqgli/project/TGS/sv_calling_50bpmin/rmetl/rmetl_hg38 detection_output -x ont -t 15 -s 1
2024-04-28 15:05:15,309 [INFO] The bam file is legal.
2024-04-28 15:05:15,368 [INFO] Loading reference genome...
2024-04-28 15:05:38,711 [INFO] The total number of chromsomes: 711
2024-04-28 15:05:39,072 [INFO] Resolving chromsome chr16.
2024-04-28 15:05:39,072 [INFO] Resolving chromsome chr14.
2024-04-28 15:05:39,072 [INFO] Resolving chromsome chr13.
2024-04-28 15:05:39,083 [INFO] Resolving chromsome chr10.
2024-04-28 15:05:39,083 [INFO] Resolving chromsome chr3.
2024-04-28 15:05:39,083 [INFO] Resolving chromsome chr5.
2024-04-28 15:05:39,083 [INFO] Resolving chromsome chr4.
2024-04-28 15:05:39,091 [INFO] Resolving chromsome chr8.
2024-04-28 15:05:39,091 [INFO] Resolving chromsome chr11.
2024-04-28 15:05:39,091 [INFO] Resolving chromsome chr1.
2024-04-28 15:05:39,096 [INFO] Resolving chromsome chr7.
2024-04-28 15:05:39,099 [INFO] Resolving chromsome chr9.
2024-04-28 15:05:39,103 [INFO] Resolving chromsome chr6.
2024-04-28 15:05:39,108 [INFO] Resolving chromsome chr12.
2024-04-28 15:05:39,125 [INFO] Resolving chromsome chr2.
2024-04-28 15:24:04,404 [INFO] Resolving chromsome chr17.
2024-04-28 15:26:32,165 [INFO] Resolving chromsome chr18.
2024-04-28 15:30:36,351 [INFO] Resolving chromsome chr15.
2024-04-28 15:30:37,380 [INFO] Resolving chromsome chrX.
2024-04-28 15:31:54,206 [INFO] Resolving chromsome chr20.
2024-04-28 15:35:03,410 [INFO] Resolving chromsome chr19.
2024-04-28 15:35:51,793 [INFO] Resolving chromsome chr22_ML143380v1_fix.
2024-04-28 15:36:58,191 [INFO] Resolving chromsome chr22.
2024-04-28 15:38:43,421 [INFO] Resolving chromsome chr21.
2024-04-28 15:39:02,172 [INFO] Resolving chromsome chrY_KN196487v1_fix.
2024-04-28 15:39:53,325 [INFO] Resolving chromsome chrY.
2024-04-28 15:42:00,047 [INFO] Resolving chromsome chr4_ML143345v1_fix.
2024-04-28 15:42:17,839 [INFO] Resolving chromsome chrUn_KI270438v1.
2024-04-28 15:42:32,855 [INFO] Resolving chromsome chr14_GL000225v1_random.
2024-04-28 15:43:05,933 [INFO] Resolving chromsome chrUn_KI270467v1.
2024-04-28 15:43:11,038 [INFO] Resolving chromsome chr15_ML143371v1_fix.
2024-04-28 15:43:19,527 [INFO] Resolving chromsome chr22_KI270733v1_random.
2024-04-28 15:43:20,010 [INFO] Resolving chromsome chr8_KZ208915v1_fix.
2024-04-28 15:43:20,783 [INFO] Resolving chromsome chrUn_GL000220v1.
2024-04-28 15:43:25,409 [INFO] Resolving chromsome chr22_KI270736v1_random.
2024-04-28 15:43:51,001 [INFO] Resolving chromsome chr21_ML143377v1_fix.
2024-04-28 15:43:53,140 [INFO] Resolving chromsome chr17_KI270729v1_random.
2024-04-28 15:43:53,188 [INFO] Resolving chromsome chr17_KI270857v1_alt.
2024-04-28 15:43:54,366 [INFO] Resolving chromsome chr16_KI270728v1_random.
2024-04-28 15:43:57,903 [INFO] Resolving chromsome chrUn_GL000224v1.
2024-04-28 15:43:59,783 [INFO] Resolving chromsome chr16_KI270853v1_alt.
2024-04-28 15:44:06,349 [INFO] Resolving chromsome chrUn_KI270442v1.
2024-04-28 15:44:06,379 [INFO] Resolving chromsome chrUn_KI270744v1.
2024-04-28 15:44:08,213 [INFO] Resolving chromsome chrUn_GL000216v2.
2024-04-28 15:44:08,348 [INFO] Resolving chromsome chr15_KN538374v1_fix.
2024-04-28 15:44:10,033 [INFO] Resolving chromsome chr15_KI270905v1_alt.
2024-04-28 15:44:11,106 [INFO] Resolving chromsome chr1_MU273333v1_fix.
2024-04-28 15:44:14,139 [INFO] Resolving chromsome chr6_GL000254v2_alt.
2024-04-28 15:44:15,518 [INFO] Resolving chromsome chr4_GL000008v2_random.
2024-04-28 15:44:16,055 [INFO] Resolving chromsome chr16_KV880768v1_fix.
2024-04-28 15:44:17,408 [INFO] Resolving chromsome chr13_KN538372v1_fix.
2024-04-28 15:44:17,999 [INFO] Resolving chromsome chr6_GL000256v2_alt.
2024-04-28 15:44:19,710 [INFO] Resolving chromsome chr14_KI270847v1_alt.
2024-04-28 15:44:20,444 [INFO] Resolving chromsome chr2_KI270716v1_random.
2024-04-28 15:44:21,434 [INFO] Resolving chromsome chr14_KI270846v1_alt.
2024-04-28 15:44:23,362 [INFO] Resolving chromsome chr5_KV575244v1_fix.
2024-04-28 15:44:24,775 [INFO] Resolving chromsome chr17_KI270908v1_alt.
2024-04-28 15:44:24,860 [INFO] Resolving chromsome chr5_GL339449v2_alt.
2024-04-28 15:44:25,110 [INFO] Resolving chromsome chr6_GL000252v2_alt.
2024-04-28 15:44:25,941 [INFO] Resolving chromsome chr1_KI270709v1_random.
2024-04-28 15:44:27,557 [INFO] Resolving chromsome chr5_MU273354v1_fix.
2024-04-28 15:44:28,368 [INFO] Resolving chromsome chrUn_GL000214v1.
2024-04-28 15:44:29,133 [INFO] Resolving chromsome chrUn_KI270751v1.
2024-04-28 15:44:30,245 [INFO] Resolving chromsome chr2_KQ031384v1_fix.
2024-04-28 15:44:30,579 [INFO] Resolving chromsome chr6_GL000255v2_alt.
2024-04-28 15:44:30,726 [INFO] Resolving chromsome chrUn_GL000226v1.
2024-04-28 15:44:30,786 [INFO] Resolving chromsome chr17_KI270730v1_random.
2024-04-28 15:44:30,860 [INFO] Resolving chromsome chr12_KZ208916v1_fix.
2024-04-28 15:44:32,104 [INFO] Resolving chromsome chr15_MU273374v1_fix.
2024-04-28 15:44:32,611 [INFO] Resolving chromsome chr4_KQ983257v1_fix.
2024-04-28 15:44:32,632 [INFO] Resolving chromsome chrUn_KI270333v1.
2024-04-28 15:44:33,071 [INFO] Resolving chromsome chrM.
2024-04-28 15:44:33,513 [INFO] Resolving chromsome chr7_KI270803v1_alt.
2024-04-28 15:44:33,876 [INFO] Resolving chromsome chr14_GL000009v2_random.
2024-04-28 15:44:33,877 [INFO] Resolving chromsome chr6_GL000251v2_alt.
2024-04-28 15:44:34,296 [INFO] Resolving chromsome chr6_GL000253v2_alt.
2024-04-28 15:44:34,462 [INFO] Resolving chromsome chr21_MU273391v1_fix.
2024-04-28 15:44:36,062 [INFO] Resolving chromsome chrUn_KI270337v1.
2024-04-28 15:44:36,161 [INFO] Resolving chromsome chrUn_GL000219v1.
2024-04-28 15:44:36,364 [INFO] Resolving chromsome chrUn_KI270757v1.
2024-04-28 15:44:37,030 [INFO] Resolving chromsome chr14_MU273373v1_fix.
2024-04-28 15:44:38,213 [INFO] Resolving chromsome chr1_KI270763v1_alt.
2024-04-28 15:44:38,369 [INFO] Resolving chromsome chr10_ML143354v1_fix.
2024-04-28 15:44:38,650 [INFO] Resolving chromsome chr2_MU273342v1_fix.
2024-04-28 15:44:38,655 [INFO] Resolving chromsome chr8_KI270821v1_alt.
2024-04-28 15:44:39,236 [INFO] Resolving chromsome chrUn_KI270538v1.
2024-04-28 15:44:40,440 [INFO] Resolving chromsome chr22_ML143378v1_fix.
2024-04-28 15:44:41,079 [INFO] Resolving chromsome chr2_KI270894v1_alt.
2024-04-28 15:44:41,779 [INFO] Resolving chromsome chr6_KI270801v1_alt.
2024-04-28 15:44:41,792 [INFO] Resolving chromsome chr13_ML143366v1_fix.
2024-04-28 15:44:41,861 [INFO] Resolving chromsome chrUn_GL000218v1.
2024-04-28 15:44:41,918 [INFO] Resolving chromsome chr1_MU273331v1_alt.
2024-04-28 15:44:42,114 [INFO] Resolving chromsome chr2_KI270772v1_alt.
2024-04-28 15:44:42,233 [INFO] Resolving chromsome chrUn_KI270742v1.
2024-04-28 15:44:43,440 [INFO] Resolving chromsome chr14_KI270722v1_random.
2024-04-28 15:44:43,840 [INFO] Resolving chromsome chrUn_KI270466v1.
2024-04-28 15:44:43,866 [INFO] Resolving chromsome chr14_KZ208920v1_fix.
2024-04-28 15:44:44,080 [INFO] Resolving chromsome chrUn_KI270519v1.
2024-04-28 15:44:44,394 [INFO] Resolving chromsome chr15_KQ031389v1_alt.
2024-04-28 15:44:44,730 [INFO] Resolving chromsome chr5_MU273352v1_fix.
2024-04-28 15:44:45,600 [INFO] Resolving chromsome chr3_GL000221v1_random.
2024-04-28 15:44:45,623 [INFO] Resolving chromsome chr14_GL000194v1_random.
2024-04-28 15:44:45,819 [INFO] Resolving chromsome chr15_KI270850v1_alt.
2024-04-28 15:44:45,870 [INFO] Resolving chromsome chr5_KI270897v1_alt.
2024-04-28 15:44:46,023 [INFO] Resolving chromsome chr7_KZ208912v1_fix.
2024-04-28 15:44:46,471 [INFO] Resolving chromsome chr2_MU273339v1_alt.
2024-04-28 15:44:46,956 [INFO] Resolving chromsome chr2_MU273337v1_alt.
2024-04-28 15:44:47,660 [INFO] Resolving chromsome chr15_ML143372v1_fix.
2024-04-28 15:44:48,129 [INFO] Resolving chromsome chr7_KV880765v1_fix.
2024-04-28 15:44:48,255 [INFO] Resolving chromsome chr6_GL000250v2_alt.
2024-04-28 15:44:48,329 [INFO] Resolving chromsome chr1_KI270892v1_alt.
2024-04-28 15:44:49,074 [INFO] Resolving chromsome chr12_KN538369v1_fix.
2024-04-28 15:44:49,219 [INFO] Resolving chromsome chr3_KN538364v1_fix.
2024-04-28 15:44:49,634 [INFO] Resolving chromsome chr1_KI270762v1_alt.
2024-04-28 15:44:49,822 [INFO] Resolving chromsome chrY_MU273398v1_fix.
2024-04-28 15:44:49,830 [INFO] Resolving chromsome chr19_ML143376v1_fix.
2024-04-28 15:44:49,831 [INFO] Resolving chromsome chr2_MU273338v1_alt.
2024-04-28 15:44:50,228 [INFO] Resolving chromsome chr1_KZ208906v1_fix.
2024-04-28 15:44:50,525 [INFO] Resolving chromsome chr5_MU273355v1_fix.
2024-04-28 15:44:51,113 [INFO] Resolving chromsome chr2_KQ983256v1_alt.
2024-04-28 15:44:51,297 [INFO] Resolving chromsome chr3_KI270784v1_alt.
2024-04-28 15:44:51,369 [INFO] Resolving chromsome chr8_MU273362v1_fix.
2024-04-28 15:44:51,432 [INFO] Resolving chromsome chrUn_KI270749v1.
2024-04-28 15:44:51,483 [INFO] Resolving chromsome chr9_MU273366v1_fix.
2024-04-28 15:44:51,766 [INFO] Resolving chromsome chr2_MU273343v1_fix.
2024-04-28 15:44:51,852 [INFO] Resolving chromsome chr3_MU273348v1_fix.
2024-04-28 15:44:52,193 [INFO] Resolving chromsome chr7_KZ208913v1_alt.
2024-04-28 15:44:52,627 [INFO] Resolving chromsome chr1_KN538360v1_fix.
2024-04-28 15:44:52,890 [INFO] Resolving chromsome chr16_KZ559113v1_fix.
2024-04-28 15:44:52,969 [INFO] Resolving chromsome chr4_GL000257v2_alt.
2024-04-28 15:44:53,329 [INFO] Resolving chromsome chr4_KI270925v1_alt.
2024-04-28 15:44:53,804 [INFO] Resolving chromsome chr17_KI270862v1_alt.
2024-04-28 15:44:53,838 [INFO] Resolving chromsome chr9_MU273365v1_fix.
2024-04-28 15:44:53,942 [INFO] Resolving chromsome chrUn_KI270743v1.
2024-04-28 15:44:53,978 [INFO] Resolving chromsome chr1_KI270759v1_alt.
2024-04-28 15:44:54,421 [INFO] Resolving chromsome chr6_MU273357v1_alt.
2024-04-28 15:44:54,555 [INFO] Resolving chromsome chr19_KQ458386v1_fix.
2024-04-28 15:44:54,809 [INFO] Resolving chromsome chr4_KV766193v1_alt.
2024-04-28 15:44:54,890 [INFO] Resolving chromsome chr19_KN196484v1_fix.
2024-04-28 15:44:54,958 [INFO] Resolving chromsome chr3_KN196475v1_fix.
2024-04-28 15:44:55,615 [INFO] Resolving chromsome chr2_KN538363v1_fix.
2024-04-28 15:44:55,750 [INFO] Resolving chromsome chrUn_KI270754v1.
2024-04-28 15:44:55,794 [INFO] Resolving chromsome chr3_KV766192v1_fix.
2024-04-28 15:44:56,104 [INFO] Resolving chromsome chr1_KI270706v1_random.
2024-04-28 15:44:56,257 [INFO] Resolving chromsome chr17_MU273380v1_fix.
2024-04-28 15:44:56,274 [INFO] Resolving chromsome chr1_MU273330v1_alt.
2024-04-28 15:44:56,517 [INFO] Resolving chromsome chr11_KI270832v1_alt.
2024-04-28 15:44:56,540 [INFO] Resolving chromsome chr19_GL949752v1_alt.
2024-04-28 15:44:56,712 [INFO] Resolving chromsome chr18_KQ090028v1_fix.
2024-04-28 15:44:56,922 [INFO] Resolving chromsome chr7_MU273358v1_alt.
2024-04-28 15:44:57,399 [INFO] Resolving chromsome chrUn_KI270435v1.
2024-04-28 15:44:57,417 [INFO] Resolving chromsome chr14_KI270844v1_alt.
2024-04-28 15:44:57,487 [INFO] Resolving chromsome chr1_GL383520v2_alt.
2024-04-28 15:44:57,553 [INFO] Resolving chromsome chr8_MU273360v1_fix.
2024-04-28 15:44:57,803 [INFO] Resolving chromsome chr15_GL383555v2_alt.
2024-04-28 15:44:57,876 [INFO] Resolving chromsome chr20_MU273389v1_fix.
2024-04-28 15:44:57,941 [INFO] Resolving chromsome chr8_KI270816v1_alt.
2024-04-28 15:44:57,943 [INFO] Resolving chromsome chr10_KN538367v1_fix.
2024-04-28 15:44:58,534 [INFO] Resolving chromsome chr11_MU273369v1_fix.
2024-04-28 15:44:58,640 [INFO] Resolving chromsome chr17_KI270909v1_alt.
2024-04-28 15:44:58,732 [INFO] Resolving chromsome chr6_KQ031387v1_fix.
2024-04-28 15:44:58,814 [INFO] Resolving chromsome chr8_KI270813v1_alt.
2024-04-28 15:44:59,037 [INFO] Resolving chromsome chr8_KI270822v1_alt.
2024-04-28 15:44:59,242 [INFO] Resolving chromsome chr9_KI270823v1_alt.
2024-04-28 15:44:59,665 [INFO] Resolving chromsome chr3_MU273346v1_fix.
2024-04-28 15:44:59,968 [INFO] Resolving chromsome chr19_MU273384v1_fix.
2024-04-28 15:45:00,012 [INFO] Resolving chromsome chr9_KN196479v1_fix.
2024-04-28 15:45:00,469 [INFO] Resolving chromsome chr1_KV880763v1_alt.
2024-04-28 15:45:00,623 [INFO] Resolving chromsome chr3_KN196476v1_fix.
2024-04-28 15:45:00,642 [INFO] Resolving chromsome chr2_KI270715v1_random.
2024-04-28 15:45:00,650 [INFO] Resolving chromsome chr3_KQ031386v1_fix.
2024-04-28 15:45:00,760 [INFO] Resolving chromsome chr14_ML143367v1_fix.
2024-04-28 15:45:01,340 [INFO] Resolving chromsome chr19_KI270938v1_alt.
2024-04-28 15:45:01,742 [INFO] Resolving chromsome chrUn_KI270747v1.
2024-04-28 15:45:01,855 [INFO] Resolving chromsome chr15_ML143370v1_fix.
2024-04-28 15:45:01,957 [INFO] Resolving chromsome chr12_ML143361v1_fix.
2024-04-28 15:45:02,018 [INFO] Resolving chromsome chr21_MU273390v1_fix.
2024-04-28 15:45:02,239 [INFO] Resolving chromsome chr3_KZ559103v1_alt.
2024-04-28 15:45:02,368 [INFO] Resolving chromsome chr1_KQ458383v1_alt.
2024-04-28 15:45:02,374 [INFO] Resolving chromsome chr17_MU273378v1_alt.
2024-04-28 15:45:02,649 [INFO] Resolving chromsome chr19_GL949746v1_alt.
2024-04-28 15:45:02,715 [INFO] Resolving chromsome chr6_KN196478v1_fix.
2024-04-28 15:45:02,805 [INFO] Resolving chromsome chr1_KN538361v1_fix.
2024-04-28 15:45:03,103 [INFO] Resolving chromsome chr1_MU273332v1_alt.
2024-04-28 15:45:03,195 [INFO] Resolving chromsome chrUn_KI270756v1.
2024-04-28 15:45:03,365 [INFO] Resolving chromsome chr9_MU273364v1_fix.
2024-04-28 15:45:03,375 [INFO] Resolving chromsome chr19_GL383573v1_alt.
2024-04-28 15:45:03,382 [INFO] Resolving chromsome chr5_GL000208v1_random.
2024-04-28 15:45:03,454 [INFO] Resolving chromsome chr3_KQ031385v1_fix.
2024-04-28 15:45:03,504 [INFO] Resolving chromsome chr17_GL383563v3_alt.
2024-04-28 15:45:03,566 [INFO] Resolving chromsome chr5_KV575243v1_alt.
2024-04-28 15:45:03,821 [INFO] Resolving chromsome chr11_KZ559109v1_fix.
2024-04-28 15:45:03,871 [INFO] Resolving chromsome chrUn_KI270746v1.
2024-04-28 15:45:03,896 [INFO] Resolving chromsome chr10_KI270824v1_alt.
2024-04-28 15:45:04,066 [INFO] Resolving chromsome chr11_KZ559108v1_fix.
2024-04-28 15:45:04,482 [INFO] Resolving chromsome chr14_KI270723v1_random.
2024-04-28 15:45:04,482 [INFO] Resolving chromsome chr18_KZ559115v1_fix.
2024-04-28 15:45:04,608 [INFO] Resolving chromsome chr11_KZ559110v1_alt.
2024-04-28 15:45:04,668 [INFO] Resolving chromsome chrUn_KI270750v1.
2024-04-28 15:45:04,943 [INFO] Resolving chromsome chr4_MU273349v1_alt.
2024-04-28 15:45:05,404 [INFO] Resolving chromsome chr1_KI270712v1_random.
2024-04-28 15:45:05,842 [INFO] Resolving chromsome chr13_ML143364v1_fix.
2024-04-28 15:45:05,979 [INFO] Resolving chromsome chr3_MU273347v1_fix.
2024-04-28 15:45:06,171 [INFO] Resolving chromsome chr12_GL877876v1_alt.
2024-04-28 15:45:06,294 [INFO] Resolving chromsome chr9_KI270719v1_random.
2024-04-28 15:45:06,484 [INFO] Resolving chromsome chr5_GL949742v1_alt.
2024-04-28 15:45:06,702 [INFO] Resolving chromsome chr16_MU273377v1_fix.
2024-04-28 15:45:06,815 [INFO] Resolving chromsome chr4_KI270896v1_alt.
2024-04-28 15:45:06,927 [INFO] Resolving chromsome chr17_KV766196v1_fix.
2024-04-28 15:45:07,180 [INFO] Resolving chromsome chr22_KI270734v1_random.
2024-04-28 15:45:07,465 [INFO] Resolving chromsome chr17_JH159146v1_alt.
2024-04-28 15:45:07,500 [INFO] Resolving chromsome chr2_MU273340v1_alt.
2024-04-28 15:45:07,753 [INFO] Resolving chromsome chr8_KI270810v1_alt.
2024-04-28 15:45:07,893 [INFO] Resolving chromsome chr10_ML143355v1_fix.
2024-04-28 15:45:07,920 [INFO] Resolving chromsome chr12_GL877875v1_alt.
2024-04-28 15:45:08,038 [INFO] Resolving chromsome chr18_GL383567v1_alt.
2024-04-28 15:45:08,103 [INFO] Resolving chromsome chrUn_KI270336v1.
2024-04-28 15:45:08,187 [INFO] Resolving chromsome chr4_ML143344v1_fix.
2024-04-28 15:45:08,215 [INFO] Resolving chromsome chr4_GL383528v1_alt.
2024-04-28 15:45:08,367 [INFO] Resolving chromsome chr8_KI270812v1_alt.
2024-04-28 15:45:08,536 [INFO] Resolving chromsome chr12_KN196482v1_fix.
2024-04-28 15:45:08,788 [INFO] Resolving chromsome chr11_ML143358v1_fix.
2024-04-28 15:45:08,825 [INFO] Resolving chromsome chr17_KV766198v1_alt.
2024-04-28 15:45:08,855 [INFO] Resolving chromsome chr11_MU273370v1_fix.
2024-04-28 15:45:08,879 [INFO] Resolving chromsome chr12_KQ759760v1_fix.
2024-04-28 15:45:09,339 [INFO] Resolving chromsome chr4_KQ983258v1_alt.
2024-04-28 15:45:09,443 [INFO] Resolving chromsome chr20_MU273388v1_fix.
2024-04-28 15:45:09,452 [INFO] Resolving chromsome chr10_KN196480v1_fix.
2024-04-28 15:45:09,737 [INFO] Resolving chromsome chr3_ML143343v1_alt.
2024-04-28 15:45:09,742 [INFO] Resolving chromsome chr8_KI270811v1_alt.
2024-04-28 15:45:09,909 [INFO] Resolving chromsome chr22_KI270732v1_random.
2024-04-28 15:45:10,102 [INFO] Resolving chromsome chr4_ML143349v1_fix.
2024-04-28 15:45:10,275 [INFO] Resolving chromsome chr17_GL383565v1_alt.
2024-04-28 15:45:10,504 [INFO] Resolving chromsome chr12_KI270904v1_alt.
2024-04-28 15:45:10,648 [INFO] Resolving chromsome chr17_MU273382v1_fix.
2024-04-28 15:45:10,841 [INFO] Resolving chromsome chr16_ML143373v1_fix.
2024-04-28 15:45:10,898 [INFO] Resolving chromsome chr17_MU273379v1_fix.
2024-04-28 15:45:11,317 [INFO] Resolving chromsome chr14_KI270725v1_random.
2024-04-28 15:45:11,384 [INFO] Resolving chromsome chr22_KI270735v1_random.
2024-04-28 15:45:11,416 [INFO] Resolving chromsome chr8_KV880767v1_fix.
2024-04-28 15:45:11,538 [INFO] Resolving chromsome chr7_KI270899v1_alt.
2024-04-28 15:45:11,665 [INFO] Resolving chromsome chr22_KI270876v1_alt.
2024-04-28 15:45:11,689 [INFO] Resolving chromsome chr19_MU273386v1_fix.
2024-04-28 15:45:11,908 [INFO] Resolving chromsome chr17_KV766197v1_alt.
2024-04-28 15:45:11,972 [INFO] Resolving chromsome chr3_JH636055v2_alt.
2024-04-28 15:45:12,072 [INFO] Resolving chromsome chr1_KQ458384v1_alt.
2024-04-28 15:45:12,146 [INFO] Resolving chromsome chr1_MU273336v1_fix.
2024-04-28 15:45:12,441 [INFO] Resolving chromsome chr6_KI270798v1_alt.
2024-04-28 15:45:12,680 [INFO] Resolving chromsome chr12_KI270835v1_alt.
2024-04-28 15:45:12,739 [INFO] Resolving chromsome chrUn_KI270741v1.
2024-04-28 15:45:13,102 [INFO] Resolving chromsome chr1_MU273334v1_fix.
2024-04-28 15:45:13,523 [INFO] Resolving chromsome chr2_MU273344v1_fix.
2024-04-28 15:45:13,542 [INFO] Resolving chromsome chr10_GL383546v1_alt.
2024-04-28 15:45:13,707 [INFO] Resolving chromsome chr5_MU273356v1_alt.
2024-04-28 15:45:13,707 [INFO] Resolving chromsome chr1_KQ031383v1_fix.
2024-04-28 15:45:13,716 [INFO] Resolving chromsome chr11_ML143359v1_fix.
2024-04-28 15:45:13,738 [INFO] Resolving chromsome chr14_ML143368v1_alt.
2024-04-28 15:45:13,896 [INFO] Resolving chromsome chr11_KI270831v1_alt.
2024-04-28 15:45:13,939 [INFO] Resolving chromsome chr15_KI270852v1_alt.
2024-04-28 15:45:14,047 [INFO] Resolving chromsome chr16_KQ090027v1_alt.
2024-04-28 15:45:14,367 [INFO] Resolving chromsome chr13_KI270838v1_alt.
2024-04-28 15:45:14,421 [INFO] Resolving chromsome chr8_KZ208914v1_fix.
2024-04-28 15:45:14,428 [INFO] Resolving chromsome chrX_MU273395v1_alt.
2024-04-28 15:45:14,584 [INFO] Resolving chromsome chr6_KZ208911v1_fix.
2024-04-28 15:45:14,592 [INFO] Resolving chromsome chr15_KI270727v1_random.
2024-04-28 15:45:14,660 [INFO] Resolving chromsome chr1_KI270765v1_alt.
2024-04-28 15:45:14,791 [INFO] Resolving chromsome chr5_KI270792v1_alt.
2024-04-28 15:45:14,884 [INFO] Resolving chromsome chrUn_KI270589v1.
2024-04-28 15:45:14,968 [INFO] Resolving chromsome chr7_KI270808v1_alt.
2024-04-28 15:45:15,073 [INFO] Resolving chromsome chr3_KI270778v1_alt.
2024-04-28 15:45:15,377 [INFO] Resolving chromsome chr21_MU273392v1_fix.
2024-04-28 15:45:15,589 [INFO] Resolving chromsome chr22_KI270879v1_alt.
2024-04-28 15:45:15,757 [INFO] Resolving chromsome chr4_KI270788v1_alt.
2024-04-28 15:45:15,890 [INFO] Resolving chromsome chr11_JH159137v1_alt.
2024-04-28 15:45:15,890 [INFO] Resolving chromsome chr12_ML143362v1_fix.
2024-04-28 15:45:15,915 [INFO] Resolving chromsome chr2_KI270774v1_alt.
2024-04-28 15:45:15,996 [INFO] Resolving chromsome chr4_ML143347v1_fix.
2024-04-28 15:45:16,763 [INFO] Resolving chromsome chr6_KQ090016v1_fix.
2024-04-28 15:45:16,778 [INFO] Resolving chromsome chr1_MU273335v1_fix.
2024-04-28 15:45:16,802 [INFO] Resolving chromsome chr11_MU273368v1_alt.
2024-04-28 15:45:16,840 [INFO] Resolving chromsome chr22_KI270875v1_alt.
2024-04-28 15:45:17,087 [INFO] Resolving chromsome chr3_KI270780v1_alt.
2024-04-28 15:45:17,090 [INFO] Resolving chromsome chr7_KI270805v1_alt.
2024-04-28 15:45:17,149 [INFO] Resolving chromsome chr4_KQ090015v1_alt.
2024-04-28 15:45:17,195 [INFO] 0 MEI/MED signal loci in the chromsome chr11_JH159137v1_alt.
2024-04-28 15:45:17,248 [INFO] Resolving chromsome chr3_KI270777v1_alt.
2024-04-28 15:45:17,251 [INFO] Resolving chromsome chr2_KN538362v1_fix.
2024-04-28 15:45:17,269 [INFO] Resolving chromsome chr13_KN538371v1_fix.
2024-04-28 15:45:17,458 [INFO] Resolving chromsome chr7_ML143352v1_fix.
2024-04-28 15:45:17,464 [INFO] Resolving chromsome chr5_MU273353v1_fix.
2024-04-28 15:45:17,544 [INFO] Resolving chromsome chr8_KI270814v1_alt.
2024-04-28 15:45:17,601 [INFO] Resolving chromsome chr8_MU273363v1_fix.
2024-04-28 15:45:17,713 [INFO] Resolving chromsome chr16_KI270855v1_alt.
2024-04-28 15:45:17,837 [INFO] Resolving chromsome chr2_ML143341v1_fix.
2024-04-28 15:45:17,999 [INFO] Resolving chromsome chr6_KI270797v1_alt.
2024-04-28 15:45:18,249 [INFO] Resolving chromsome chr11_KI270826v1_alt.
2024-04-28 15:45:18,355 [INFO] Resolving chromsome chr4_KI270789v1_alt.
2024-04-28 15:45:18,386 [INFO] Resolving chromsome chr12_KZ208918v1_alt.
2024-04-28 15:45:18,393 [INFO] Resolving chromsome chr20_KI270870v1_alt.
2024-04-28 15:45:18,431 [INFO] Resolving chromsome chr11_JH159136v1_alt.
2024-04-28 15:45:18,431 [INFO] Resolving chromsome chr22_KI270737v1_random.
2024-04-28 15:45:18,543 [INFO] Resolving chromsome chr22_KI270878v1_alt.
2024-04-28 15:45:18,722 [INFO] Resolving chromsome chrUn_GL000195v1.
2024-04-28 15:45:18,902 [INFO] Resolving chromsome chr3_KI270782v1_alt.
2024-04-28 15:45:19,044 [INFO] Resolving chromsome chrUn_GL000213v1.
2024-04-28 15:45:19,105 [INFO] Resolving chromsome chr19_GL949747v2_alt.
2024-04-28 15:45:19,142 [INFO] Resolving chromsome chr3_KZ559105v1_alt.
2024-04-28 15:45:19,211 [INFO] Resolving chromsome chr4_MU273351v1_fix.
2024-04-28 15:45:19,264 [INFO] Resolving chromsome chr5_GL383531v1_alt.
2024-04-28 15:45:19,291 [INFO] Resolving chromsome chr5_KN196477v1_alt.
2024-04-28 15:45:19,396 [INFO] Resolving chromsome chr2_KI270776v1_alt.
2024-04-28 15:45:19,821 [INFO] Resolving chromsome chr1_KN196472v1_fix.
2024-04-28 15:45:19,822 [INFO] Resolving chromsome chr18_GL383571v1_alt.
2024-04-28 15:45:19,832 [INFO] Resolving chromsome chr15_ML143369v1_fix.
2024-04-28 15:45:19,839 [INFO] Resolving chromsome chr18_KQ458385v1_alt.
2024-04-28 15:45:20,062 [INFO] Resolving chromsome chr11_KQ090022v1_fix.
2024-04-28 15:45:20,068 [INFO] Resolving chromsome chr17_MU273383v1_fix.
2024-04-28 15:45:20,115 [INFO] Resolving chromsome chr10_KI270825v1_alt.
2024-04-28 15:45:20,121 [INFO] Resolving chromsome chr16_KQ031390v1_alt.
2024-04-28 15:45:20,129 [INFO] Resolving chromsome chr2_KZ208907v1_alt.
2024-04-28 15:45:20,472 [INFO] Resolving chromsome chr5_KI270791v1_alt.
2024-04-28 15:45:20,614 [INFO] Resolving chromsome chr7_KI270809v1_alt.
2024-04-28 15:45:20,782 [INFO] Resolving chromsome chr21_KI270873v1_alt.
2024-04-28 15:45:20,919 [INFO] Resolving chromsome chr8_KI270926v1_alt.
2024-04-28 15:45:21,012 [INFO] Resolving chromsome chr9_KQ090018v1_alt.
2024-04-28 15:45:21,084 [INFO] Resolving chromsome chr7_KZ559106v1_alt.
2024-04-28 15:45:21,281 [INFO] Resolving chromsome chr21_GL383579v2_alt.
2024-04-28 15:45:21,305 [INFO] Resolving chromsome chr3_KZ559102v1_alt.
2024-04-28 15:45:21,338 [INFO] Resolving chromsome chr14_KI270845v1_alt.
2024-04-28 15:45:21,408 [INFO] Resolving chromsome chr14_KI270726v1_random.
2024-04-28 15:45:21,461 [INFO] Resolving chromsome chr13_KI270839v1_alt.
2024-04-28 15:45:21,534 [INFO] Resolving chromsome chr10_KQ090021v1_fix.
2024-04-28 15:45:21,619 [INFO] Resolving chromsome chr13_KI270840v1_alt.
2024-04-28 15:45:21,743 [INFO] Resolving chromsome chr3_KZ208909v1_alt.
2024-04-28 15:45:21,802 [INFO] Resolving chromsome chr14_KI270724v1_random.
2024-04-28 15:45:21,983 [INFO] Resolving chromsome chr11_GL383547v1_alt.
2024-04-28 15:45:22,059 [INFO] Resolving chromsome chr1_KN196473v1_fix.
2024-04-28 15:45:22,257 [INFO] Resolving chromsome chr19_GL383576v1_alt.
2024-04-28 15:45:22,389 [INFO] Resolving chromsome chr17_KV575245v1_fix.
2024-04-28 15:45:22,399 [INFO] Resolving chromsome chr8_MU273359v1_fix.
2024-04-28 15:45:22,441 [INFO] Resolving chromsome chr17_KI270861v1_alt.
2024-04-28 15:45:22,513 [INFO] Resolving chromsome chr21_KI270874v1_alt.
2024-04-28 15:45:22,599 [INFO] Resolving chromsome chrX_MU273397v1_alt.
2024-04-28 15:45:22,630 [INFO] Resolving chromsome chrY_KZ208924v1_fix.
2024-04-28 15:45:22,807 [INFO] Resolving chromsome chr11_KI270903v1_alt.
2024-04-28 15:45:22,896 [INFO] Resolving chromsome chrX_KI270913v1_alt.
2024-04-28 15:45:22,921 [INFO] Resolving chromsome chr1_GL383518v1_alt.
2024-04-28 15:45:23,077 [INFO] Resolving chromsome chr12_GL383551v1_alt.
2024-04-28 15:45:23,147 [INFO] Resolving chromsome chr8_KV880766v1_fix.
2024-04-28 15:45:23,183 [INFO] Resolving chromsome chr9_KI270718v1_random.
2024-04-28 15:45:23,239 [INFO] Resolving chromsome chr12_KZ559112v1_alt.
2024-04-28 15:45:23,256 [INFO] Resolving chromsome chr11_ML143360v1_fix.
2024-04-28 15:45:23,391 [INFO] Resolving chromsome chr15_MU273375v1_alt.
2024-04-28 15:45:23,433 [INFO] Resolving chromsome chr1_KI270760v1_alt.
2024-04-28 15:45:23,573 [INFO] Resolving chromsome chr17_ML143374v1_fix.
2024-04-28 15:45:23,623 [INFO] Resolving chromsome chr3_KZ559101v1_alt.
2024-04-28 15:45:23,662 [INFO] Resolving chromsome chr17_GL000258v2_alt.
2024-04-28 15:45:23,959 [INFO] Resolving chromsome chr17_MU273381v1_fix.
2024-04-28 15:45:23,967 [INFO] Resolving chromsome chr4_GL383527v1_alt.
2024-04-28 15:45:24,026 [INFO] Resolving chromsome chr7_KQ031388v1_fix.
2024-04-28 15:45:24,122 [INFO] Resolving chromsome chr6_KV766194v1_fix.
2024-04-28 15:45:24,144 [INFO] Resolving chromsome chr2_KZ208908v1_alt.
2024-04-28 15:45:24,240 [INFO] Resolving chromsome chrX_KI270880v1_alt.
2024-04-28 15:45:24,257 [INFO] Resolving chromsome chr10_MU273367v1_fix.
2024-04-28 15:45:24,258 [INFO] Resolving chromsome chr3_KI270781v1_alt.
2024-04-28 15:45:24,388 [INFO] Resolving chromsome chr4_KI270787v1_alt.
2024-04-28 15:45:24,460 [INFO] Resolving chromsome chr2_MU273345v1_fix.
2024-04-28 15:45:24,470 [INFO] Resolving chromsome chr5_KI270796v1_alt.
2024-04-28 15:45:24,493 [INFO] Resolving chromsome chr4_KI270790v1_alt.
2024-04-28 15:45:24,717 [INFO] Resolving chromsome chr18_KI270864v1_alt.
2024-04-28 15:45:24,730 [INFO] Resolving chromsome chr18_KI270863v1_alt.
2024-04-28 15:45:24,804 [INFO] Resolving chromsome chr15_GL383554v1_alt.
2024-04-28 15:45:24,843 [INFO] Resolving chromsome chr18_GL383570v1_alt.
2024-04-28 15:45:24,904 [INFO] Resolving chromsome chr8_KI270900v1_alt.
2024-04-28 15:45:24,914 [INFO] Resolving chromsome chrUn_KI270591v1.
2024-04-28 15:45:24,968 [INFO] Resolving chromsome chr13_KN538373v1_fix.
2024-04-28 15:45:25,077 [INFO] Resolving chromsome chr11_KZ559111v1_alt.
2024-04-28 15:45:25,092 [INFO] Resolving chromsome chr11_ML143357v1_fix.
2024-04-28 15:45:25,096 [INFO] Resolving chromsome chr3_GL383526v1_alt.
2024-04-28 15:45:25,096 [INFO] Resolving chromsome chr9_GL383541v1_alt.
2024-04-28 15:45:25,361 [INFO] Resolving chromsome chr12_GL383550v2_alt.
2024-04-28 15:45:25,373 [INFO] Resolving chromsome chr11_KN538368v1_alt.
2024-04-28 15:45:25,521 [INFO] Resolving chromsome chr11_KQ759759v2_fix.
2024-04-28 15:45:25,522 [INFO] Resolving chromsome chr13_KQ090024v1_alt.
2024-04-28 15:45:25,600 [INFO] Resolving chromsome chr5_KI270793v1_alt.
2024-04-28 15:45:25,607 [INFO] Resolving chromsome chr11_KQ759759v1_fix.
2024-04-28 15:45:25,772 [INFO] Resolving chromsome chr14_KZ208919v1_alt.
2024-04-28 15:45:25,927 [INFO] Resolving chromsome chr11_KI270927v1_alt.
2024-04-28 15:45:25,941 [INFO] Resolving chromsome chr6_GL383533v1_alt.
2024-04-28 15:45:25,951 [INFO] Resolving chromsome chr4_KQ090014v1_alt.
2024-04-28 15:45:25,961 [INFO] Resolving chromsome chr22_GL383582v2_alt.
2024-04-28 15:45:25,978 [INFO] Resolving chromsome chr19_MU273387v1_alt.
2024-04-28 15:45:26,045 [INFO] Resolving chromsome chr13_KI270843v1_alt.
2024-04-28 15:45:26,218 [INFO] Resolving chromsome chr19_GL383574v1_alt.
2024-04-28 15:45:26,245 [INFO] Resolving chromsome chr11_KN196481v1_fix.
2024-04-28 15:45:26,254 [INFO] Resolving chromsome chrX_KV766199v1_alt.
2024-04-28 15:45:26,289 [INFO] Resolving chromsome chrX_ML143381v1_fix.
2024-04-28 15:45:26,347 [INFO] Resolving chromsome chr5_KI270794v1_alt.
2024-04-28 15:45:26,407 [INFO] Resolving chromsome chr13_KI270841v1_alt.
2024-04-28 15:45:26,424 [INFO] Resolving chromsome chr17_KI270860v1_alt.
2024-04-28 15:45:26,434 [INFO] Resolving chromsome chr7_KV880764v1_fix.
2024-04-28 15:45:26,479 [INFO] Resolving chromsome chr11_KV766195v1_fix.
2024-04-28 15:45:26,576 [INFO] Resolving chromsome chr15_KI270849v1_alt.
2024-04-28 15:45:26,606 [INFO] Resolving chromsome chr1_KQ458382v1_alt.
2024-04-28 15:45:26,777 [INFO] Resolving chromsome chr10_KN538366v1_fix.
2024-04-28 15:45:26,851 [INFO] Resolving chromsome chr1_GL383519v1_alt.
2024-04-28 15:45:26,865 [INFO] Resolving chromsome chr19_KI270867v1_alt.
2024-04-28 15:45:26,877 [INFO] Resolving chromsome chr6_KI270800v1_alt.
2024-04-28 15:45:26,891 [INFO] Resolving chromsome chrUn_KI270748v1.
2024-04-28 15:45:26,934 [INFO] Resolving chromsome chr13_KQ090025v1_alt.
2024-04-28 15:45:26,974 [INFO] Resolving chromsome chr22_KI270731v1_random.
2024-04-28 15:45:27,016 [INFO] Resolving chromsome chr8_KI270815v1_alt.
2024-04-28 15:45:27,035 [INFO] Resolving chromsome chr21_GL383581v2_alt.
2024-04-28 15:45:27,105 [INFO] Resolving chromsome chr9_KQ090019v1_alt.
2024-04-28 15:45:27,239 [INFO] Resolving chromsome chr11_KI270829v1_alt.
2024-04-28 15:45:27,312 [INFO] Resolving chromsome chr7_KI270807v1_alt.
2024-04-28 15:45:27,404 [INFO] Resolving chromsome chr10_GL383545v1_alt.
2024-04-28 15:45:27,411 [INFO] Resolving chromsome chr10_KQ090020v1_alt.
2024-04-28 15:45:27,423 [INFO] Resolving chromsome chr8_KI270819v1_alt.
2024-04-28 15:45:27,434 [INFO] Resolving chromsome chr17_ML143375v1_fix.
2024-04-28 15:45:27,450 [INFO] Resolving chromsome chr8_KI270818v1_alt.
2024-04-28 15:45:27,481 [INFO] Resolving chromsome chr16_GL383556v1_alt.
2024-04-28 15:45:27,531 [INFO] Resolving chromsome chr5_KZ208910v1_alt.
2024-04-28 15:45:27,584 [INFO] Resolving chromsome chr2_KI270770v1_alt.
2024-04-28 15:45:27,644 [INFO] Resolving chromsome chr4_KI270786v1_alt.
2024-04-28 15:45:27,690 [INFO] Resolving chromsome chr17_KI270858v1_alt.
2024-04-28 15:45:27,738 [INFO] Resolving chromsome chr12_GL383553v2_alt.
2024-04-28 15:45:27,755 [INFO] Resolving chromsome chr18_KI270912v1_alt.
2024-04-28 15:45:27,765 [INFO] Resolving chromsome chr2_KI270767v1_alt.
2024-04-28 15:45:27,808 [INFO] Resolving chromsome chr18_KZ559116v1_alt.
2024-04-28 15:45:27,828 [INFO] Resolving chromsome chr18_GL383572v1_alt.
2024-04-28 15:45:27,940 [INFO] Resolving chromsome chr17_KI270907v1_alt.
2024-04-28 15:45:27,994 [INFO] Resolving chromsome chr19_GL949753v2_alt.
2024-04-28 15:45:28,012 [INFO] Resolving chromsome chr1_KZ208905v1_alt.
2024-04-28 15:45:28,040 [INFO] Resolving chromsome chrX_MU273396v1_alt.
2024-04-28 15:45:28,087 [INFO] Resolving chromsome chr1_KI270766v1_alt.
2024-04-28 15:45:28,087 [INFO] Resolving chromsome chr3_KI270783v1_alt.
2024-04-28 15:45:28,107 [INFO] Resolving chromsome chr2_KI270893v1_alt.
2024-04-28 15:45:28,126 [INFO] Resolving chromsome chr5_GL383530v1_alt.
2024-04-28 15:45:28,185 [INFO] Resolving chromsome chr7_KI270806v1_alt.
2024-04-28 15:45:28,232 [INFO] Resolving chromsome chr19_GL383575v2_alt.
2024-04-28 15:45:28,278 [INFO] Resolving chromsome chr5_KI270795v1_alt.
2024-04-28 15:45:28,284 [INFO] Resolving chromsome chr8_KI270901v1_alt.
2024-04-28 15:45:28,348 [INFO] Resolving chromsome chr8_MU273361v1_fix.
2024-04-28 15:45:28,367 [INFO] Resolving chromsome chrUn_KI270753v1.
2024-04-28 15:45:28,411 [INFO] Resolving chromsome chr6_KB021644v2_alt.
2024-04-28 15:45:28,475 [INFO] Resolving chromsome chr1_KI270761v1_alt.
2024-04-28 15:45:28,521 [INFO] 0 MEI/MED signal loci in the chromsome chr1_KI270766v1_alt.
2024-04-28 15:45:28,535 [INFO] Resolving chromsome chrUn_KI270512v1.
2024-04-28 15:45:28,574 [INFO] Resolving chromsome chr22_GL383583v2_alt.
2024-04-28 15:45:28,612 [INFO] Resolving chromsome chr18_KZ208922v1_fix.
2024-04-28 15:45:28,644 [INFO] Resolving chromsome chr22_KI270738v1_random.
2024-04-28 15:45:28,686 [INFO] Resolving chromsome chr17_GL000205v2_random.
2024-04-28 15:45:28,694 [INFO] Resolving chromsome chr12_MU273372v1_fix.
2024-04-28 15:45:28,746 [INFO] Resolving chromsome chr19_MU273385v1_fix.
2024-04-28 15:45:28,773 [INFO] Resolving chromsome chr12_GL383549v1_alt.
2024-04-28 15:45:28,783 [INFO] Resolving chromsome chr2_GL383521v1_alt.
2024-04-28 15:45:28,785 [INFO] Resolving chromsome chr1_KN196474v1_fix.
2024-04-28 15:45:28,879 [INFO] Resolving chromsome chr17_KI270910v1_alt.
2024-04-28 15:45:28,903 [INFO] Resolving chromsome chr4_ML143348v1_fix.
2024-04-28 15:45:29,001 [INFO] Resolving chromsome chr19_KI270915v1_alt.
2024-04-28 15:45:29,024 [INFO] Resolving chromsome chr9_KI270720v1_random.
2024-04-28 15:45:29,062 [INFO] Resolving chromsome chr17_GL383566v1_alt.
2024-04-28 15:45:29,101 [INFO] Resolving chromsome chr5_ML143350v1_fix.
2024-04-28 15:45:29,116 [INFO] Resolving chromsome chr2_GL383522v1_alt.
2024-04-28 15:45:29,167 [INFO] Resolving chromsome chr9_GL383539v1_alt.
2024-04-28 15:45:29,190 [INFO] Resolving chromsome chr15_KI270848v1_alt.
2024-04-28 15:45:29,220 [INFO] Resolving chromsome chr3_KI270895v1_alt.
2024-04-28 15:45:29,289 [INFO] Resolving chromsome chrUn_KI270330v1.
2024-04-28 15:45:29,321 [INFO] Resolving chromsome chr16_KZ208921v1_alt.
2024-04-28 15:45:29,361 [INFO] Resolving chromsome chr16_MU273376v1_fix.
2024-04-28 15:45:29,371 [INFO] Resolving chromsome chr1_KZ208904v1_alt.
2024-04-28 15:45:29,392 [INFO] Resolving chromsome chr2_KI270769v1_alt.
2024-04-28 15:45:29,393 [INFO] Resolving chromsome chr6_ML143351v1_fix.
2024-04-28 15:45:29,421 [INFO] Resolving chromsome chr2_KI270775v1_alt.
2024-04-28 15:45:29,472 [INFO] Resolving chromsome chr16_GL383557v1_alt.
2024-04-28 15:45:29,522 [INFO] Resolving chromsome chr8_KI270817v1_alt.
2024-04-28 15:45:29,536 [INFO] Resolving chromsome chr11_KI270830v1_alt.
2024-04-28 15:45:29,562 [INFO] Resolving chromsome chr12_KI270834v1_alt.
2024-04-28 15:45:29,567 [INFO] 0 MEI/MED signal loci in the chromsome chr16_MU273376v1_fix.
2024-04-28 15:45:29,627 [INFO] Resolving chromsome chr22_KI270877v1_alt.
2024-04-28 15:45:29,650 [INFO] Resolving chromsome chr3_KZ559104v1_fix.
2024-04-28 15:45:29,710 [INFO] Resolving chromsome chr16_KI270854v1_alt.
2024-04-28 15:45:29,711 [INFO] Resolving chromsome chr7_KI270804v1_alt.
2024-04-28 15:45:29,719 [INFO] Resolving chromsome chrX_MU273394v1_fix.
2024-04-28 15:45:29,725 [INFO] 0 MEI/MED signal loci in the chromsome chr16_KZ208921v1_alt.
2024-04-28 15:45:29,731 [INFO] Resolving chromsome chr20_GL383577v2_alt.
2024-04-28 15:45:29,779 [INFO] Resolving chromsome chr21_GL383578v2_alt.
2024-04-28 15:45:29,806 [INFO] Resolving chromsome chr2_KI270768v1_alt.
2024-04-28 15:45:29,827 [INFO] Resolving chromsome chr20_KI270869v1_alt.
2024-04-28 15:45:29,848 [INFO] Resolving chromsome chr21_GL383580v2_alt.
2024-04-28 15:45:29,848 [INFO] Resolving chromsome chr16_KQ090026v1_alt.
2024-04-28 15:45:29,850 [INFO] Resolving chromsome chr17_KI270859v1_alt.
2024-04-28 15:45:29,854 [INFO] Resolving chromsome chr11_MU273371v1_fix.
2024-04-28 15:45:29,884 [INFO] Resolving chromsome chr4_KI270785v1_alt.
2024-04-28 15:45:29,897 [INFO] Resolving chromsome chr16_KI270856v1_alt.
2024-04-28 15:45:29,912 [INFO] Resolving chromsome chr13_KN196483v1_fix.
2024-04-28 15:45:29,950 [INFO] Resolving chromsome chr1_KI270710v1_random.
2024-04-28 15:45:29,978 [INFO] Resolving chromsome chr18_GL383569v1_alt.
2024-04-28 15:45:29,978 [INFO] Resolving chromsome chr18_KI270911v1_alt.
2024-04-28 15:45:30,073 [INFO] Resolving chromsome chr5_GL383532v1_alt.
2024-04-28 15:45:30,123 [INFO] Resolving chromsome chr6_KI270799v1_alt.
2024-04-28 15:45:30,123 [INFO] Resolving chromsome chrUn_KI270515v1.
2024-04-28 15:45:30,127 [INFO] Resolving chromsome chr3_KI270779v1_alt.
2024-04-28 15:45:30,129 [INFO] Resolving chromsome chr11_KI270721v1_random.
2024-04-28 15:45:30,140 [INFO] Resolving chromsome chr21_KI270872v1_alt.
2024-04-28 15:45:30,141 [INFO] Resolving chromsome chr1_KQ983255v1_alt.
2024-04-28 15:45:30,238 [INFO] Resolving chromsome chr2_MU273341v1_fix.
2024-04-28 15:45:30,238 [INFO] Resolving chromsome chr17_KZ559114v1_alt.
2024-04-28 15:45:30,260 [INFO] Resolving chromsome chr4_MU273350v1_fix.
2024-04-28 15:45:30,314 [INFO] 0 MEI/MED signal loci in the chromsome chr6_KI270799v1_alt.
2024-04-28 15:45:30,356 [INFO] Resolving chromsome chr15_KI270906v1_alt.
2024-04-28 15:45:30,360 [INFO] Resolving chromsome chr12_KZ208917v1_fix.
2024-04-28 15:45:30,380 [INFO] Resolving chromsome chr4_KQ090013v1_alt.
2024-04-28 15:45:30,380 [INFO] Resolving chromsome chr19_GL949751v2_alt.
2024-04-28 15:45:30,418 [INFO] Resolving chromsome chr3_KI270937v1_alt.
2024-04-28 15:45:30,456 [INFO] Resolving chromsome chr1_KZ559100v1_fix.
2024-04-28 15:45:30,532 [INFO] Resolving chromsome chr18_GL383568v1_alt.
2024-04-28 15:45:30,538 [INFO] Resolving chromsome chr3_KI270924v1_alt.
2024-04-28 15:45:30,567 [INFO] Resolving chromsome chr3_KI270934v1_alt.
2024-04-28 15:45:30,586 [INFO] Resolving chromsome chr13_ML143365v1_fix.
2024-04-28 15:45:30,598 [INFO] Resolving chromsome chr7_GL383534v2_alt.
2024-04-28 15:45:30,640 [INFO] Resolving chromsome chr8_KZ559107v1_alt.
2024-04-28 15:45:30,651 [INFO] 0 MEI/MED signal loci in the chromsome chr7_GL383534v2_alt.
2024-04-28 15:45:30,658 [INFO] Resolving chromsome chr12_KN538370v1_fix.
2024-04-28 15:45:30,666 [INFO] Resolving chromsome chr9_ML143353v1_fix.
2024-04-28 15:45:30,699 [INFO] Resolving chromsome chr2_KI270773v1_alt.
2024-04-28 15:45:30,708 [INFO] Resolving chromsome chr17_GL383564v2_alt.
2024-04-28 15:45:30,755 [INFO] Resolving chromsome chr19_GL949749v2_alt.
2024-04-28 15:45:30,826 [INFO] Resolving chromsome chr19_GL949750v2_alt.
2024-04-28 15:45:30,826 [INFO] Resolving chromsome chr12_GL383552v1_alt.
2024-04-28 15:45:30,842 [INFO] Resolving chromsome chrUn_KI270511v1.
2024-04-28 15:45:30,846 [INFO] Resolving chromsome chr9_KI270717v1_random.
2024-04-28 15:45:30,880 [INFO] Resolving chromsome chr3_KI270936v1_alt.
2024-04-28 15:45:30,929 [INFO] Resolving chromsome chr11_KI270827v1_alt.
2024-04-28 15:45:30,938 [INFO] Resolving chromsome chr12_KI270833v1_alt.
2024-04-28 15:45:30,941 [INFO] Resolving chromsome chr20_KI270871v1_alt.
2024-04-28 15:45:30,959 [INFO] Resolving chromsome chr11_KI270902v1_alt.
2024-04-28 15:45:30,971 [INFO] Resolving chromsome chr22_KQ458387v1_alt.
2024-04-28 15:45:31,004 [INFO] Resolving chromsome chrUn_KI270448v1.
2024-04-28 15:45:31,016 [INFO] Resolving chromsome chr19_KI270868v1_alt.
2024-04-28 15:45:31,034 [INFO] Resolving chromsome chr19_GL949748v2_alt.
2024-04-28 15:45:31,046 [INFO] Resolving chromsome chr1_KI270707v1_random.
2024-04-28 15:45:31,047 [INFO] Resolving chromsome chr2_ML143342v1_fix.
2024-04-28 15:45:31,064 [INFO] Resolving chromsome chrUn_KI270755v1.
2024-04-28 15:45:31,064 [INFO] Resolving chromsome chr6_KQ090017v1_alt.
2024-04-28 15:45:31,070 [INFO] Resolving chromsome chrUn_KI270579v1.
2024-04-28 15:45:31,088 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270448v1.
2024-04-28 15:45:31,093 [INFO] Resolving chromsome chr15_KI270851v1_alt.
2024-04-28 15:45:31,146 [INFO] Resolving chromsome chr19_KI270916v1_alt.
2024-04-28 15:45:31,150 [INFO] Resolving chromsome chr19_KI270887v1_alt.
2024-04-28 15:45:31,160 [INFO] 0 MEI/MED signal loci in the chromsome chr6_KQ090017v1_alt.
2024-04-28 15:45:31,168 [INFO] Resolving chromsome chr1_KI270764v1_alt.
2024-04-28 15:45:31,181 [INFO] Resolving chromsome chr9_GL383542v1_alt.
2024-04-28 15:45:31,215 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270916v1_alt.
2024-04-28 15:45:31,227 [INFO] Resolving chromsome chrUn_KI270590v1.
2024-04-28 15:45:31,238 [INFO] Resolving chromsome chrUn_KI270521v1.
2024-04-28 15:45:31,247 [INFO] Resolving chromsome chr2_GL582966v2_alt.
2024-04-28 15:45:31,258 [INFO] Resolving chromsome chr4_ML143346v1_fix.
2024-04-28 15:45:31,259 [INFO] 0 MEI/MED signal loci in the chromsome chr2_GL582966v2_alt.
2024-04-28 15:45:31,273 [INFO] Resolving chromsome chr1_KI270711v1_random.
2024-04-28 15:45:31,292 [INFO] Resolving chromsome chr6_KI270802v1_alt.
2024-04-28 15:45:31,317 [INFO] Resolving chromsome chrX_KI270881v1_alt.
2024-04-28 15:45:31,318 [INFO] Resolving chromsome chr22_KQ759762v2_fix.
2024-04-28 15:45:31,325 [INFO] Resolving chromsome chr12_KI270836v1_alt.
2024-04-28 15:45:31,327 [INFO] Resolving chromsome chr12_KQ090023v1_alt.
2024-04-28 15:45:31,342 [INFO] Resolving chromsome chr9_GL383540v1_alt.
2024-04-28 15:45:31,355 [INFO] Resolving chromsome chr3_KI270935v1_alt.
2024-04-28 15:45:31,356 [INFO] Resolving chromsome chr2_KI270771v1_alt.
2024-04-28 15:45:31,385 [INFO] 0 MEI/MED signal loci in the chromsome chr2_KI270771v1_alt.
2024-04-28 15:45:31,389 [INFO] Resolving chromsome chr17_JH159148v1_alt.
2024-04-28 15:45:31,408 [INFO] Resolving chromsome chrUn_KI270510v1.
2024-04-28 15:45:31,411 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270510v1.
2024-04-28 15:45:31,422 [INFO] Resolving chromsome chr1_KI270708v1_random.
2024-04-28 15:45:31,428 [INFO] Resolving chromsome chr22_KQ759762v1_fix.
2024-04-28 15:45:31,446 [INFO] Resolving chromsome chrY_KZ208923v1_fix.
2024-04-28 15:45:31,451 [INFO] Resolving chromsome chr1_KI270713v1_random.
2024-04-28 15:45:31,454 [INFO] Resolving chromsome chr8_KI270820v1_alt.
2024-04-28 15:45:31,471 [INFO] Resolving chromsome chrY_KI270740v1_random.
2024-04-28 15:45:31,506 [INFO] 0 MEI/MED signal loci in the chromsome chr1_KI270713v1_random.
2024-04-28 15:45:31,529 [INFO] Resolving chromsome chr13_ML143363v1_fix.
2024-04-28 15:45:31,530 [INFO] Resolving chromsome chr5_KI270898v1_alt.
2024-04-28 15:45:31,542 [INFO] Resolving chromsome chr17_JH159147v1_alt.
2024-04-28 15:45:31,571 [INFO] Resolving chromsome chr19_KI270865v1_alt.
2024-04-28 15:45:31,578 [INFO] Resolving chromsome chrUn_KI270507v1.
2024-04-28 15:45:31,596 [INFO] Resolving chromsome chr1_KI270714v1_random.
2024-04-28 15:45:31,596 [INFO] Resolving chromsome chr11_ML143356v1_fix.
2024-04-28 15:45:31,613 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270887v1_alt.
2024-04-28 15:45:31,622 [INFO] Resolving chromsome chrUn_KI270320v1.
2024-04-28 15:45:31,622 [INFO] Resolving chromsome chr22_KI270739v1_random.
2024-04-28 15:45:31,625 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270320v1.
2024-04-28 15:45:31,640 [INFO] Resolving chromsome chrX_MU273393v1_fix.
2024-04-28 15:45:31,646 [INFO] Resolving chromsome chrUn_KI270310v1.
2024-04-28 15:45:31,648 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270310v1.
2024-04-28 15:45:31,673 [INFO] Resolving chromsome chrX_ML143383v1_fix.
2024-04-28 15:45:31,674 [INFO] Resolving chromsome chrUn_KI270516v1.
2024-04-28 15:45:31,685 [INFO] Resolving chromsome chrUn_KI270303v1.
2024-04-28 15:45:31,687 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270303v1.
2024-04-28 15:45:31,689 [INFO] Resolving chromsome chrUn_KI270465v1.
2024-04-28 15:45:31,690 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270465v1.
2024-04-28 15:45:31,691 [INFO] Resolving chromsome chrUn_KI270517v1.
2024-04-28 15:45:31,706 [INFO] Resolving chromsome chr22_ML143379v1_fix.
2024-04-28 15:45:31,737 [INFO] Resolving chromsome chr19_KI270885v1_alt.
2024-04-28 15:45:31,740 [INFO] 0 MEI/MED signal loci in the chromsome chrX_MU273393v1_fix.
2024-04-28 15:45:31,748 [INFO] Resolving chromsome chrUn_KI270468v1.
2024-04-28 15:45:31,750 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270468v1.
2024-04-28 15:45:31,750 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270885v1_alt.
2024-04-28 15:45:31,753 [INFO] Resolving chromsome chrUn_KI270588v1.
2024-04-28 15:45:31,754 [INFO] Resolving chromsome chrUn_KI270522v1.
2024-04-28 15:45:31,764 [INFO] Resolving chromsome chrUn_KI270529v1.
2024-04-28 15:45:31,766 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270529v1.
2024-04-28 15:45:31,774 [INFO] Resolving chromsome chrUn_KI270584v1.
2024-04-28 15:45:31,776 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270584v1.
2024-04-28 15:45:31,807 [INFO] Resolving chromsome chr19_KI270866v1_alt.
2024-04-28 15:45:31,807 [INFO] Resolving chromsome chrUn_KI270518v1.
2024-04-28 15:45:31,808 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270518v1.
2024-04-28 15:45:31,818 [INFO] Resolving chromsome chrUn_KI270528v1.
2024-04-28 15:45:31,818 [INFO] Resolving chromsome chrX_ML143385v1_fix.
2024-04-28 15:45:31,825 [INFO] Resolving chromsome chrUn_KI270508v1.
2024-04-28 15:45:31,826 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270508v1.
2024-04-28 15:45:31,828 [INFO] Resolving chromsome chrX_ML143382v1_fix.
2024-04-28 15:45:31,836 [INFO] Resolving chromsome chr22_KI270928v1_alt.
2024-04-28 15:45:31,839 [INFO] 0 MEI/MED signal loci in the chromsome chr22_KI270928v1_alt.
2024-04-28 15:45:31,844 [INFO] Resolving chromsome chr12_KI270837v1_alt.
2024-04-28 15:45:31,845 [INFO] Resolving chromsome chrUn_KI270582v1.
2024-04-28 15:45:31,846 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270582v1.
2024-04-28 15:45:31,879 [INFO] Resolving chromsome chr22_KB663609v1_alt.
2024-04-28 15:45:31,879 [INFO] Resolving chromsome chr22_KQ458388v1_alt.
2024-04-28 15:45:31,882 [INFO] Resolving chromsome chrUn_KI270411v1.
2024-04-28 15:45:31,882 [INFO] 0 MEI/MED signal loci in the chromsome chr22_KQ458388v1_alt.
2024-04-28 15:45:31,884 [INFO] 0 MEI/MED signal loci in the chromsome chr22_KB663609v1_alt.
2024-04-28 15:45:31,895 [INFO] Resolving chromsome chrUn_KI270322v1.
2024-04-28 15:45:31,895 [INFO] Resolving chromsome chr19_KI270888v1_alt.
2024-04-28 15:45:31,896 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270322v1.
2024-04-28 15:45:31,897 [INFO] Resolving chromsome chr19_KI270921v1_alt.
2024-04-28 15:45:31,897 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270888v1_alt.
2024-04-28 15:45:31,898 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270921v1_alt.
2024-04-28 15:45:31,910 [INFO] Resolving chromsome chrUn_KI270317v1.
2024-04-28 15:45:31,911 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270317v1.
2024-04-28 15:45:31,914 [INFO] Resolving chromsome chrUn_KI270311v1.
2024-04-28 15:45:31,914 [INFO] Resolving chromsome chrUn_KI270530v1.
2024-04-28 15:45:31,915 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270311v1.
2024-04-28 15:45:31,916 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270530v1.
2024-04-28 15:45:31,922 [INFO] Resolving chromsome chrUn_KI270745v1.
2024-04-28 15:45:31,951 [INFO] Resolving chromsome chrUn_KI270422v1.
2024-04-28 15:45:31,951 [INFO] Resolving chromsome chr13_KI270842v1_alt.
2024-04-28 15:45:31,964 [INFO] Resolving chromsome chr19_KV575256v1_alt.
2024-04-28 15:45:31,965 [INFO] Resolving chromsome chr19_KV575250v1_alt.
2024-04-28 15:45:31,965 [INFO] Resolving chromsome chrUn_KI270418v1.
2024-04-28 15:45:31,981 [INFO] Resolving chromsome chr22_KN196486v1_alt.
2024-04-28 15:45:31,981 [INFO] Resolving chromsome chrUn_KI270544v1.
2024-04-28 15:45:31,981 [INFO] Resolving chromsome chrX_ML143384v1_fix.
2024-04-28 15:45:31,982 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270544v1.
2024-04-28 15:45:31,983 [INFO] 0 MEI/MED signal loci in the chromsome chr22_KN196486v1_alt.
2024-04-28 15:45:31,992 [INFO] Resolving chromsome chr19_KI270889v1_alt.
2024-04-28 15:45:31,994 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270889v1_alt.
2024-04-28 15:45:32,014 [INFO] Resolving chromsome chrUn_KI270419v1.
2024-04-28 15:45:32,020 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270411v1.
2024-04-28 15:45:32,020 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270418v1.
2024-04-28 15:45:32,020 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270422v1.
2024-04-28 15:45:32,029 [INFO] Resolving chromsome chrUn_KI270587v1.
2024-04-28 15:45:32,030 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270587v1.
2024-04-28 15:45:32,038 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575256v1_alt.
2024-04-28 15:45:32,045 [INFO] Resolving chromsome chr19_KV575255v1_alt.
2024-04-28 15:45:32,046 [INFO] Resolving chromsome chr19_KI270891v1_alt.
2024-04-28 15:45:32,046 [INFO] Resolving chromsome chr19_KI270882v1_alt.
2024-04-28 15:45:32,048 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270891v1_alt.
2024-04-28 15:45:32,048 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270882v1_alt.
2024-04-28 15:45:32,063 [INFO] Resolving chromsome chr19_KI270931v1_alt.
2024-04-28 15:45:32,064 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270931v1_alt.
2024-04-28 15:45:32,086 [INFO] Resolving chromsome chrUn_KI270509v1.
2024-04-28 15:45:32,087 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270509v1.
2024-04-28 15:45:32,099 [INFO] Resolving chromsome chrUn_KI270583v1.
2024-04-28 15:45:32,100 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270583v1.
2024-04-28 15:45:32,106 [INFO] Resolving chromsome chr19_KV575249v1_alt.
2024-04-28 15:45:32,106 [INFO] Resolving chromsome chr10_KN538365v1_fix.
2024-04-28 15:45:32,106 [INFO] Resolving chromsome chrUn_KI270375v1.
2024-04-28 15:45:32,107 [INFO] 0 MEI/MED signal loci in the chromsome chr10_KN538365v1_fix.
2024-04-28 15:45:32,107 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270375v1.
2024-04-28 15:45:32,107 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575249v1_alt.
2024-04-28 15:45:32,109 [INFO] Resolving chromsome chr22_KN196485v1_alt.
2024-04-28 15:45:32,112 [INFO] 0 MEI/MED signal loci in the chromsome chr22_KN196485v1_alt.
2024-04-28 15:45:32,119 [INFO] Resolving chromsome chr22_KQ759761v1_alt.
2024-04-28 15:45:32,120 [INFO] 0 MEI/MED signal loci in the chromsome chr22_KQ759761v1_alt.
2024-04-28 15:45:32,122 [INFO] Resolving chromsome chr19_KI270923v1_alt.
2024-04-28 15:45:32,122 [INFO] Resolving chromsome chr19_KI270922v1_alt.
2024-04-28 15:45:32,123 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270923v1_alt.
2024-04-28 15:45:32,124 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270922v1_alt.
2024-04-28 15:45:32,143 [INFO] Resolving chromsome chrUn_KI270312v1.
2024-04-28 15:45:32,144 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270312v1.
2024-04-28 15:45:32,156 [INFO] Resolving chromsome chrUn_KI270420v1.
2024-04-28 15:45:32,157 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270420v1.
2024-04-28 15:45:32,170 [INFO] Resolving chromsome chrUn_KI270423v1.
2024-04-28 15:45:32,171 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270423v1.
2024-04-28 15:45:32,181 [INFO] Resolving chromsome chrUn_KI270395v1.
2024-04-28 15:45:32,182 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270395v1.
2024-04-28 15:45:32,184 [INFO] Resolving chromsome chrUn_KI270429v1.
2024-04-28 15:45:32,184 [INFO] Resolving chromsome chrUn_KI270387v1.
2024-04-28 15:45:32,184 [INFO] Resolving chromsome chrUn_KI270366v1.
2024-04-28 15:45:32,185 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270429v1.
2024-04-28 15:45:32,185 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270387v1.
2024-04-28 15:45:32,185 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270366v1.
2024-04-28 15:45:32,193 [INFO] Resolving chromsome chrUn_KI270372v1.
2024-04-28 15:45:32,197 [INFO] Resolving chromsome chr19_KI270886v1_alt.
2024-04-28 15:45:32,197 [INFO] Resolving chromsome chr19_KV575253v1_alt.
2024-04-28 15:45:32,199 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270886v1_alt.
2024-04-28 15:45:32,224 [INFO] Resolving chromsome chr19_KI270890v1_alt.
2024-04-28 15:45:32,225 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270890v1_alt.
2024-04-28 15:45:32,226 [INFO] Resolving chromsome chr19_KI270917v1_alt.
2024-04-28 15:45:32,228 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270917v1_alt.
2024-04-28 15:45:32,233 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575253v1_alt.
2024-04-28 15:45:32,241 [INFO] Resolving chromsome chr19_KI270918v1_alt.
2024-04-28 15:45:32,242 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270918v1_alt.
2024-04-28 15:45:32,252 [INFO] Resolving chromsome chr19_GL000209v2_alt.
2024-04-28 15:45:32,261 [INFO] Resolving chromsome chrUn_KI270593v1.
2024-04-28 15:45:32,261 [INFO] Resolving chromsome chrUn_KI270581v1.
2024-04-28 15:45:32,261 [INFO] Resolving chromsome chr6_KI270758v1_alt.
2024-04-28 15:45:32,261 [INFO] Resolving chromsome chrUn_KI270305v1.
2024-04-28 15:45:32,262 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270593v1.
2024-04-28 15:45:32,263 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270305v1.
2024-04-28 15:45:32,263 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270581v1.
2024-04-28 15:45:32,263 [INFO] 0 MEI/MED signal loci in the chromsome chr6_KI270758v1_alt.
2024-04-28 15:45:32,266 [INFO] 0 MEI/MED signal loci in the chromsome chr19_GL000209v2_alt.
2024-04-28 15:45:32,274 [INFO] Resolving chromsome chrUn_KI270364v1.
2024-04-28 15:45:32,296 [INFO] Resolving chromsome chr19_KV575252v1_alt.
2024-04-28 15:45:32,297 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575252v1_alt.
2024-04-28 15:45:32,303 [INFO] Resolving chromsome chr19_KV575257v1_alt.
2024-04-28 15:45:32,304 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575257v1_alt.
2024-04-28 15:45:32,309 [INFO] Resolving chromsome chr19_KI270883v1_alt.
2024-04-28 15:45:32,310 [INFO] Resolving chromsome chr19_KV575258v1_alt.
2024-04-28 15:45:32,310 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270883v1_alt.
2024-04-28 15:45:32,311 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575258v1_alt.
2024-04-28 15:45:32,331 [INFO] Resolving chromsome chr19_KI270884v1_alt.
2024-04-28 15:45:32,332 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270884v1_alt.
2024-04-28 15:45:32,341 [INFO] Resolving chromsome chr19_KI270914v1_alt.
2024-04-28 15:45:32,341 [INFO] Resolving chromsome chr19_KI270919v1_alt.
2024-04-28 15:45:32,341 [INFO] Resolving chromsome chr19_KI270929v1_alt.
2024-04-28 15:45:32,342 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270914v1_alt.
2024-04-28 15:45:32,343 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270919v1_alt.
2024-04-28 15:45:32,343 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270929v1_alt.
2024-04-28 15:45:32,348 [INFO] Resolving chromsome chr19_KI270930v1_alt.
2024-04-28 15:45:32,349 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270930v1_alt.
2024-04-28 15:45:32,353 [INFO] Resolving chromsome chr19_KI270932v1_alt.
2024-04-28 15:45:32,354 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270932v1_alt.
2024-04-28 15:45:32,365 [INFO] Resolving chromsome chr19_KI270933v1_alt.
2024-04-28 15:45:32,380 [INFO] Resolving chromsome chrUn_KI270302v1.
2024-04-28 15:45:32,381 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270302v1.
2024-04-28 15:45:32,382 [INFO] Resolving chromsome chrUn_KI270315v1.
2024-04-28 15:45:32,383 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270315v1.
2024-04-28 15:45:32,387 [INFO] Resolving chromsome chrUn_KI270417v1.
2024-04-28 15:45:32,389 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270417v1.
2024-04-28 15:45:32,402 [INFO] Resolving chromsome chrUn_KI270548v1.
2024-04-28 15:45:32,404 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270548v1.
2024-04-28 15:45:32,418 [INFO] Resolving chromsome chrUn_KI270340v1.
2024-04-28 15:45:32,419 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270340v1.
2024-04-28 15:45:32,421 [INFO] Resolving chromsome chrUn_KI270329v1.
2024-04-28 15:45:32,421 [INFO] Resolving chromsome chrUn_KI270378v1.
2024-04-28 15:45:32,421 [INFO] Resolving chromsome chrUn_KI270363v1.
2024-04-28 15:45:32,423 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270329v1.
2024-04-28 15:45:32,423 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270363v1.
2024-04-28 15:45:32,423 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270378v1.
2024-04-28 15:45:32,433 [INFO] Resolving chromsome chrUn_KI270389v1.
2024-04-28 15:45:32,434 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270389v1.
2024-04-28 15:45:32,441 [INFO] Resolving chromsome chrUn_KI270396v1.
2024-04-28 15:45:32,442 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270396v1.
2024-04-28 15:45:32,449 [INFO] Resolving chromsome chrUn_KI270388v1.
2024-04-28 15:45:32,450 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270388v1.
2024-04-28 15:45:32,461 [INFO] Resolving chromsome chrUn_KI270392v1.
2024-04-28 15:45:32,462 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270392v1.
2024-04-28 15:45:32,466 [INFO] Resolving chromsome chrUn_KI270381v1.
2024-04-28 15:45:32,467 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270381v1.
2024-04-28 15:45:32,474 [INFO] Resolving chromsome chrUn_KI270385v1.
2024-04-28 15:45:32,475 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270385v1.
2024-04-28 15:45:32,490 [INFO] Resolving chromsome chr19_KV575247v1_alt.
2024-04-28 15:45:32,491 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575247v1_alt.
2024-04-28 15:45:32,502 [INFO] Resolving chromsome chr19_KV575248v1_alt.
2024-04-28 15:45:32,502 [INFO] Resolving chromsome chr19_KV575259v1_alt.
2024-04-28 15:45:32,502 [INFO] Resolving chromsome chr19_KV575254v1_alt.
2024-04-28 15:45:32,503 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575259v1_alt.
2024-04-28 15:45:32,503 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575254v1_alt.
2024-04-28 15:45:32,503 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575248v1_alt.
2024-04-28 15:45:32,512 [INFO] Resolving chromsome chrUn_KI270304v1.
2024-04-28 15:45:32,513 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270304v1.
2024-04-28 15:45:32,513 [INFO] Resolving chromsome chr19_KI270920v1_alt.
2024-04-28 15:45:32,514 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KI270920v1_alt.
2024-04-28 15:45:32,520 [INFO] Resolving chromsome chrUn_KI270316v1.
2024-04-28 15:45:32,521 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270316v1.
2024-04-28 15:45:32,541 [INFO] Resolving chromsome chrUn_KI270412v1.
2024-04-28 15:45:32,542 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270412v1.
2024-04-28 15:45:32,543 [INFO] Resolving chromsome chrUn_KI270424v1.
2024-04-28 15:45:32,543 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270424v1.
2024-04-28 15:45:32,544 [INFO] Resolving chromsome chrUn_KI270414v1.
2024-04-28 15:45:32,544 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270414v1.
2024-04-28 15:45:32,562 [INFO] Resolving chromsome chrUn_KI270425v1.
2024-04-28 15:45:32,563 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270425v1.
2024-04-28 15:45:32,582 [INFO] Resolving chromsome chrUn_KI270335v1.
2024-04-28 15:45:32,583 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270335v1.
2024-04-28 15:45:32,583 [INFO] Resolving chromsome chrUn_KI270334v1.
2024-04-28 15:45:32,583 [INFO] Resolving chromsome chrUn_KI270539v1.
2024-04-28 15:45:32,583 [INFO] Resolving chromsome chrUn_KI270580v1.
2024-04-28 15:45:32,583 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270334v1.
2024-04-28 15:45:32,583 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270539v1.
2024-04-28 15:45:32,583 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270580v1.
2024-04-28 15:45:32,593 [INFO] Resolving chromsome chrUn_KI270362v1.
2024-04-28 15:45:32,593 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270362v1.
2024-04-28 15:45:32,594 [INFO] Resolving chromsome chrUn_KI270338v1.
2024-04-28 15:45:32,594 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270338v1.
2024-04-28 15:45:32,613 [INFO] Resolving chromsome chrUn_KI270379v1.
2024-04-28 15:45:32,613 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270379v1.
2024-04-28 15:45:32,619 [INFO] Resolving chromsome chrUn_KI270394v1.
2024-04-28 15:45:32,619 [INFO] Resolving chromsome chrUn_KI270390v1.
2024-04-28 15:45:32,619 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270394v1.
2024-04-28 15:45:32,620 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270390v1.
2024-04-28 15:45:32,633 [INFO] Resolving chromsome chrUn_KI270386v1.
2024-04-28 15:45:32,634 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270386v1.
2024-04-28 15:45:32,653 [INFO] Resolving chromsome chrUn_KI270391v1.
2024-04-28 15:45:32,654 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270391v1.
2024-04-28 15:45:32,661 [INFO] Resolving chromsome chrUn_KI270383v1.
2024-04-28 15:45:32,661 [INFO] Resolving chromsome chrUn_KI270393v1.
2024-04-28 15:45:32,662 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270383v1.
2024-04-28 15:45:32,662 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270393v1.
2024-04-28 15:45:32,662 [INFO] Resolving chromsome chrUn_KI270382v1.
2024-04-28 15:45:32,663 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270382v1.
2024-04-28 15:45:32,664 [INFO] Resolving chromsome chrUn_KI270384v1.
2024-04-28 15:45:32,664 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270384v1.
2024-04-28 15:45:32,674 [INFO] Resolving chromsome chrUn_KI270376v1.
2024-04-28 15:45:32,675 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270376v1.
2024-04-28 15:45:32,683 [INFO] Resolving chromsome chrUn_KI270374v1.
2024-04-28 15:45:32,683 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270374v1.
2024-04-28 15:45:32,696 [INFO] Resolving chromsome chrUn_KI270373v1.
2024-04-28 15:45:32,697 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270373v1.
2024-04-28 15:45:32,698 [INFO] Resolving chromsome chrUn_KI270371v1.
2024-04-28 15:45:32,698 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270371v1.
2024-04-28 15:45:32,702 [INFO] Resolving chromsome chrUn_KI270752v1.
2024-04-28 15:45:32,703 [INFO] 0 MEI/MED signal loci in the chromsome chrUn_KI270752v1.
2024-04-28 15:45:32,720 [INFO] Resolving chromsome chr19_KV575246v1_alt.
2024-04-28 15:45:32,720 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575246v1_alt.
2024-04-28 15:45:32,726 [INFO] Resolving chromsome chr19_KV575251v1_alt.
2024-04-28 15:45:32,727 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575251v1_alt.
2024-04-28 15:45:32,727 [INFO] Resolving chromsome chr19_KV575260v1_alt.
2024-04-28 15:45:32,727 [INFO] 0 MEI/MED signal loci in the chromsome chr19_KV575260v1_alt.
2024-04-28 15:49:23,516 [ERROR] Merging ME signatures failed!
2024-04-28 15:49:23,517 [ERROR] RETCODE 1
2024-04-28 15:49:23,517 [ERROR] STDOUT b'cat: /data/renqgli/project/TGS/sv_calling_50bpmin/rmetl/rmetl_hg38/signatures/*: \xe6\xb2\xa1\xe6\x9c\x89\xe9\x82\xa3\xe4\xb8\xaa\xe6\x96\x87\xe4\xbb\xb6\xe6\x88\x96\xe7\x9b\xae\xe5\xbd\x95\n'
2024-04-28 15:49:23,517 [ERROR] STDERR None
2024-04-28 15:49:23,517 [ERROR] Exiting
rl4940 commented 2 months ago

And my cmd is here:

rMETL detection /data/hg38_aln.sorted.bam\
 /data/refseq/hg38.p14.fa\
 /data/project/TGS/sv_calling_50bpmin/rmetl/rmetl_hg38\
 detection_output -x ont -t 15 -s 1
tjiangHIT commented 2 months ago

Hello @rl4940,

Sorry for replying so late. I have checked your log info, the error was raised when integrating the signatures via 'cat'. Can you check whether the files are abnormal (e.g., empty? or containing errors?), which are located in '/data/renqgli/project/TGS/sv_calling_50bpmin/rmetl/rmetl_hg38/signatures/'?

Hope your reply. Best wishes, Tao

rl4940 commented 2 months ago

@tjiangHIT Hi Dr. Jiang: The signature dir is indeed empty, actually, I do not know how to resolve this.

Thanks

tjiangHIT commented 2 months ago

Hello @rl4940,

The log info tells me there were no MEI or MED signatures found. Therefore, it is currently impossible to determine whether there is a problem with rMETL. If convenient, you can use Samtools to extract a small portion of the data you are using and give it to me, I will reproduce this problem later. My email is tjiang@hit.edu.cn.

Best regards, Tao